RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RBSNQ9H1K0 784 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 THEGQ9P2T0 379 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 EMILIN1Q9Y6C2 1016 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 ABCC2Q92887 1545 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 HLA-DOAP06340 250 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 E2F4Q16254 413 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 GKAP1Q5VSY0 366 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 SMC5Q8IY18 1101 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 C17orf53Q8N3J3 647 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 CAPZA3Q96KX2 299 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 RAB34Q9BZG1 259 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 SYCP2Q9BX26 1530 aa9.8□□□□□ -0.84
LIMCH1-218ENST00000513024 ATP2A1O14983 1001 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 RASEFQ8IZ41 740 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 PRPF31Q8WWY3 499 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 SETDB2Q96T68 719 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 SLC26A6Q9BXS9 759 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 FAN1Q9Y2M0 1017 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 SNCBQ16143 134 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 TEX2Q8IWB9 1127 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 SUPT20HQ8NEM7 779 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 SAAL1Q96ER3 474 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 UIMC1Q96RL1 719 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 TRIM6Q9C030 488 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 TCP11L1Q9NUJ3 509 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 ARHGEF5Q12774 1597 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 HPDP32754 393 aaPredicted RBP9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 TMEM67Q5HYA8 995 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 KANK3Q6NY19 840 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 TRMT1LQ7Z2T5 733 aaKnown RBP9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 UHRF1BP1LA0JNW5 1464 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 NPC1L1Q9UHC9 1359 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 KRT86O43790 486 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 METAP2P50579 478 aaKnown RBP eCLIP9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 RASSF2P50749 326 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 PPFIA1Q13136 1202 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 TMEM266Q2M3C6 531 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 RRAGBQ5VZM2 374 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 OTUD7BQ6GQQ9 843 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 ADCY10Q96PN6 1610 aa9.79□□□□□ -0.84
LIMCH1-218ENST00000513024 SPECC1L-ADORA2AF8WAN1 911 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 PDE1AP54750 535 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 IRX4P78413 519 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 MAP3K12Q12852 859 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 SPAG5Q96R06 1193 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 ESYT1Q9BSJ8 1104 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 IFNKQ9P0W0 207 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 COMMD10Q9Y6G5 202 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 ASXL1Q8IXJ9 1541 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 ABCA8O94911 1581 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 TMED1Q13445 227 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 BRDTQ58F21 947 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 SDCCAG8Q86SQ7 713 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 VPS52Q8N1B4 723 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 MEIS3Q99687 375 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 CARD14Q9BXL6 1004 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 PPP1R9AQ9ULJ8 1098 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 TNNQ9UQP3 1299 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 CDC42BPAQ5VT25 1732 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 ERCC6L2Q5T890 1561 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 FAM83GA6ND36 823 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 PPFIA4O75335 1185 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 ELF2Q15723 593 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 EFCAB13Q8IY85 973 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 KIAA1524Q8TCG1 905 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 PPP1R9BQ96SB3 815 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 MKL2Q9ULH7 1088 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 RRP15Q9Y3B9 282 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 KLF18A0A0U1RQI7 1052 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 LPXNO60711 386 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 APBA3O96018 575 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 ZNF569Q5MCW4 686 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 MCTP2Q6DN12 878 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 ANKRD24Q8TF21 1146 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 IFT81Q8WYA0 676 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 N4BP2L2Q92802 583 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 MTRF1LQ9UGC7 380 aaKnown RBP9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 GUCA1BQ9UMX6 200 aa9.78□□□□□ -0.84
LIMCH1-218ENST00000513024 RPSAP08865 295 aaKnown RBP9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 GFAPP14136 432 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 POLE2P56282 527 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 USHBP1Q8N6Y0 703 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 NEK11Q8NG66 645 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 KCNG4Q8TDN1 519 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 CUL5Q93034 780 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 RABEP2Q9H5N1 569 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 SCINQ9Y6U3 715 aa9.77□□□□□ -0.84
LIMCH1-218ENST00000513024 ATP5DP30049 168 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 ATICP31939 592 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 KRT83P78385 493 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 TUBB2AQ13885 445 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 PPP1R7Q15435 360 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 FYB2Q5VWT5 728 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 CATIPQ7Z7H3 387 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 NME9Q86XW9 330 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 SMC1BQ8NDV3 1235 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 TUBB2BQ9BVA1 445 aa9.77□□□□□ -0.85
LIMCH1-218ENST00000513024 UTP14AQ9BVJ6 771 aaKnown RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms