RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 INPP5BP32019 993 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 TNNI2P48788 182 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 RASGRF1Q13972 1273 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 FKBP1CQ5VVH2 108 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 PI16Q6UXB8 463 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 FAM83AQ86UY5 434 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 FAM43AQ8N2R8 423 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 OTUD5Q96G74 571 aa13.9□□□□□ -0.18
LIMCH1-214ENST00000512228 SALL1Q9NSC2 1324 aa13.9□□□□□ -0.19
LIMCH1-214ENST00000512228 A0A1B0GUL7 405 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 IRF6O14896 467 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 ALDH1A1P00352 501 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 LDHBP07195 334 aaKnown RBP13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 RLBP1P12271 317 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 TBC1D9Q6ZT07 1266 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 SH3BP5LQ7L8J4 393 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 OTOP1Q7RTM1 612 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 CD99L2Q8TCZ2 262 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 USP40Q9NVE5 1235 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 ZSWIM8A7E2V4 1837 aa13.89□□□□□ -0.19
LIMCH1-214ENST00000512228 SPDYE5A6NIY4 337 aa13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 GNAI3P08754 354 aa13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 HNRNPUQ00839 825 aaKnown RBP eCLIP13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 PKN2Q16513 984 aaKnown RBP13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 FBXO46Q6PJ61 603 aaPredicted RBP13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 FAM151AQ8WW52 585 aa13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 WRNIP1Q96S55 665 aa13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 ZNF112Q9UJU3 913 aa13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 DENND2AQ9ULE3 1009 aa13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 TRIM17Q9Y577 477 aa13.88□□□□□ -0.19
LIMCH1-214ENST00000512228 CCL15-CCL14A0A0B4J2E2 113 aa13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 IPO8O15397 1037 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 CCL15Q16663 113 aa13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 DIEXFQ68CQ4 756 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 NEUROD6Q96NK8 337 aa13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 C1orf115Q9H7X2 142 aa13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 DDX4Q9NQI0 724 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 GNL3LQ9NVN8 582 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 HMG20BQ9P0W2 317 aa13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 MAST3O60307 1309 aa13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 MYO5AQ9Y4I1 1855 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-214ENST00000512228 PHF20L1A8MW92 1017 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 BTBD19C9JJ37 291 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 SEMA3EO15041 775 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 ZBTB22O15209 634 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 GNAI2P04899 355 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 MOGSQ13724 837 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 ERO1BQ86YB8 467 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 TMOD2Q9NZR1 351 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 ABCF2Q9UG63 623 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 CSADQ9Y600 493 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 GAKO14976 1311 aa13.86□□□□□ -0.19
LIMCH1-214ENST00000512228 ATRNL1Q5VV63 1379 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 DDTLA6NHG4 134 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 ZBTB7BO15156 539 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 WDHD1O75717 1129 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 CTGFP29279 349 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 RGS3P49796 1198 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 GTF2A2P52657 109 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 SP3Q02447 781 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 MECOMQ03112 1051 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 POLA2Q14181 598 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 ZKSCAN2Q63HK3 967 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 ZNF341Q9BYN7 854 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 ARHGAP39Q9C0H5 1083 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 HDAC5Q9UQL6 1122 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 PTPN22Q9Y2R2 807 aa13.85□□□□□ -0.19
LIMCH1-214ENST00000512228 POTEFA5A3E0 1075 aa13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 ECM2O94769 699 aaPredicted RBP13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 RHBDL3P58872 404 aa13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 ATP8B2P98198 1209 aa13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 OTUD7BQ6GQQ9 843 aa13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 FAM163AQ96GL9 167 aaPredicted RBP13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 IDI2Q9BXS1 227 aa13.84□□□□□ -0.19
LIMCH1-214ENST00000512228 RPAP1Q9BWH6 1393 aaPredicted RBP13.83□□□□□ -0.19
LIMCH1-214ENST00000512228 MCAMP43121 646 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 BTDP43251 543 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 PPIL2Q13356 520 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 TAF1CQ15572 869 aaPredicted RBP13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 SPATA5Q8NB90 893 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 SSH3Q8TE77 659 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 SNRKQ9NRH2 765 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 AKAP2Q9Y2D5 859 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 RFX7Q2KHR2 1363 aa13.83□□□□□ -0.2
LIMCH1-214ENST00000512228 GPR75-ASB3A0A0A6YYF3 556 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 CETPP11597 493 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 MAP3K10Q02779 954 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 PPATQ06203 517 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 G3BP1Q13283 466 aaKnown RBP eCLIP13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 RRP1BQ14684 758 aaKnown RBP13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 DCAF15Q66K64 600 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 CCDC84Q86UT8 332 aaPredicted RBP13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 NSUN4Q96CB9 384 aaKnown RBP13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 ERO1AQ96HE7 468 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 DBNDD2Q9BQY9 259 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 ZFYVE28Q9HCC9 887 aa13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 PDS5AQ29RF7 1337 aaKnown RBP13.82□□□□□ -0.2
LIMCH1-214ENST00000512228 TNRC18O15417 2968 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms