RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 RTKN2Q8IZC4 609 aa12.45□□□□□ -0.42
TPM3-217ENST00000504663 ZGPATQ8N5A5 531 aaKnown RBP12.45□□□□□ -0.42
TPM3-217ENST00000504663 SIPA1L1O43166 1804 aa12.45□□□□□ -0.42
TPM3-217ENST00000504663 MROH7-TTC4A0A0A0MT08 1334 aa12.44□□□□□ -0.42
TPM3-217ENST00000504663 FRAT2O75474 233 aaPredicted RBP12.44□□□□□ -0.42
TPM3-217ENST00000504663 FGAP02671 866 aa12.44□□□□□ -0.42
TPM3-217ENST00000504663 MCCP23508 829 aa12.44□□□□□ -0.42
TPM3-217ENST00000504663 FKBP1AP62942 108 aaKnown RBP12.44□□□□□ -0.42
TPM3-217ENST00000504663 SUPT20HQ8NEM7 779 aa12.44□□□□□ -0.42
TPM3-217ENST00000504663 ZNF277Q9NRM2 450 aaPredicted RBP12.44□□□□□ -0.42
TPM3-217ENST00000504663 MAGEB6P1A0A0J9YX57 407 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 PPIP5K2O43314 1243 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 LDHBP07195 334 aaKnown RBP12.43□□□□□ -0.42
TPM3-217ENST00000504663 PPP4CP60510 307 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 SOGA3Q5TF21 947 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 SPTY2D1Q68D10 685 aaPredicted RBP12.43□□□□□ -0.42
TPM3-217ENST00000504663 TBC1D22AQ8WUA7 517 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 AIDAQ96BJ3 306 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 FAM163AQ96GL9 167 aaPredicted RBP12.43□□□□□ -0.42
TPM3-217ENST00000504663 TM6SF1Q9BZW5 370 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 FHDC1Q9C0D6 1143 aaPredicted RBP12.43□□□□□ -0.42
TPM3-217ENST00000504663 ZSWIM6Q9HCJ5 1215 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 MKRN1Q9UHC7 482 aaKnown RBP12.43□□□□□ -0.42
TPM3-217ENST00000504663 SUGT1Q9Y2Z0 365 aa12.43□□□□□ -0.42
TPM3-217ENST00000504663 SMIM22K7EJ46 135 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 CPA1P15085 419 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 IARSP41252 1262 aaKnown RBP12.42□□□□□ -0.42
TPM3-217ENST00000504663 SLC4A3P48751 1232 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 RHBDL3P58872 404 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 STRIP1Q5VSL9 837 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 TBC1D10CQ8IV04 446 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 IFNL3Q8IZI9 196 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 SDR42E1Q8WUS8 393 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 DDRGK1Q96HY6 314 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 UPF3BQ9BZI7 483 aaKnown RBP12.42□□□□□ -0.42
TPM3-217ENST00000504663 TMX4Q9H1E5 349 aaPredicted RBP12.42□□□□□ -0.42
TPM3-217ENST00000504663 VPS33BQ9H267 617 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 PPP1R1BQ9UD71 204 aaPredicted RBP12.42□□□□□ -0.42
TPM3-217ENST00000504663 DAGLAQ9Y4D2 1042 aa12.42□□□□□ -0.42
TPM3-217ENST00000504663 MYH1P12882 1939 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 GPR75-ASB3A0A0A6YYF3 556 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 PATL2C9JE40 543 aaKnown RBP12.41□□□□□ -0.42
TPM3-217ENST00000504663 CAPN15O75808 1086 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 RASSF7Q02833 373 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 EVX2Q03828 476 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 DZIP1Q86YF9 867 aaKnown RBP12.41□□□□□ -0.42
TPM3-217ENST00000504663 JAKMIP1Q96N16 626 aaKnown RBP12.41□□□□□ -0.42
TPM3-217ENST00000504663 GMLQ99445 158 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 TAOK3Q9H2K8 898 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 AATFQ9NY61 560 aaKnown RBP eCLIP12.41□□□□□ -0.42
TPM3-217ENST00000504663 BCS1LQ9Y276 419 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 SLC4A4Q9Y6R1 1079 aa12.41□□□□□ -0.42
TPM3-217ENST00000504663 E7EWF7 191 aa12.4□□□□□ -0.42
TPM3-217ENST00000504663 GNAT2P19087 354 aa12.4□□□□□ -0.42
TPM3-217ENST00000504663 SH3RF3Q8TEJ3 882 aaPredicted RBP12.4□□□□□ -0.42
TPM3-217ENST00000504663 PCDHAC2Q9Y5I4 1007 aa12.4□□□□□ -0.42
TPM3-217ENST00000504663 NEDD4P46934 1319 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 USP17L3A6NCW0 530 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 USP17L4A6NCW7 530 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 RPS6KB1P23443 525 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 BTDP43251 543 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 HAND2P61296 217 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 ST3GAL1Q11201 340 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 USP17L1Q7RTZ2 530 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 MB21D2Q8IYB1 491 aaPredicted RBP12.39□□□□□ -0.43
TPM3-217ENST00000504663 ALDH8A1Q9H2A2 487 aaPredicted RBP12.39□□□□□ -0.43
TPM3-217ENST00000504663 DCP1AQ9NPI6 582 aaPredicted RBP12.39□□□□□ -0.43
TPM3-217ENST00000504663 ANAPC4Q9UJX5 808 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 ROBO3Q96MS0 1386 aa12.39□□□□□ -0.43
TPM3-217ENST00000504663 K7ELQ4 463 aaPredicted RBP12.38□□□□□ -0.43
TPM3-217ENST00000504663 PSMD14O00487 310 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 LARGE1O95461 756 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 VIL1P09327 827 aaKnown RBP12.38□□□□□ -0.43
TPM3-217ENST00000504663 CASTP20810 708 aaKnown RBP12.38□□□□□ -0.43
TPM3-217ENST00000504663 DDIT3P35638 169 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 NEK4P51957 841 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 AK2P54819 239 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 ANTXR2P58335 489 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 GSTO1P78417 241 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 EXOSC10Q01780 885 aaKnown RBP12.38□□□□□ -0.43
TPM3-217ENST00000504663 TOB2Q14106 344 aaPredicted RBP12.38□□□□□ -0.43
TPM3-217ENST00000504663 RNF20Q5VTR2 975 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 APOBEC3HQ6NTF7 200 aaKnown RBP12.38□□□□□ -0.43
TPM3-217ENST00000504663 GIMAP6Q6P9H5 292 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 RUFY3Q7L099 469 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 LARGE2Q8N3Y3 721 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 SYT17Q9BSW7 474 aa12.38□□□□□ -0.43
TPM3-217ENST00000504663 TTF2Q9UNY4 1162 aaKnown RBP12.38□□□□□ -0.43
TPM3-217ENST00000504663 GREB1LQ9C091 1923 aaPredicted RBP12.37□□□□□ -0.43
TPM3-217ENST00000504663 CYP2D7A0A087X1C5 515 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 LDHCP07864 332 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 FGRP09769 529 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 ZKSCAN1P17029 563 aaPredicted RBP12.37□□□□□ -0.43
TPM3-217ENST00000504663 KRT32Q14532 448 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 RSBN1LQ6PCB5 846 aaPredicted RBP12.37□□□□□ -0.43
TPM3-217ENST00000504663 CTR9Q6PD62 1173 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 HHIPL2Q6UWX4 724 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 TCEANC2Q96MN5 208 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 NEK1Q96PY6 1258 aa12.37□□□□□ -0.43
TPM3-217ENST00000504663 MRIQ9BWK5 157 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms