RNA–Protein interactions for RNA: ENST00000503942.1

UBE3D-205, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 3

Gene UBE3D, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-205ENST00000503942 CYP27C1Q4G0S4 372 aa8.06□□□□□ -1.12
UBE3D-205ENST00000503942 FAM168AQ92567 244 aa8.06□□□□□ -1.12
UBE3D-205ENST00000503942 RC3H2Q9HBD1 1191 aaKnown RBP8.06□□□□□ -1.12
UBE3D-205ENST00000503942 ECEL1O95672 775 aa8.05□□□□□ -1.12
UBE3D-205ENST00000503942 NPR3P17342 541 aa8.05□□□□□ -1.12
UBE3D-205ENST00000503942 BNIP3Q12983 259 aa8.05□□□□□ -1.12
UBE3D-205ENST00000503942 CORO1BQ9BR76 489 aa8.05□□□□□ -1.12
UBE3D-205ENST00000503942 ZFYVE28Q9HCC9 887 aa8.05□□□□□ -1.12
UBE3D-205ENST00000503942 MBNL3Q9NUK0 354 aaKnown RBP8.05□□□□□ -1.12
UBE3D-205ENST00000503942 ADAMTS6Q9UKP5 1117 aa8.05□□□□□ -1.12
UBE3D-205ENST00000503942 GRIA4P48058 902 aa8.04□□□□□ -1.12
UBE3D-205ENST00000503942 MTMR3Q13615 1198 aa8.04□□□□□ -1.12
UBE3D-205ENST00000503942 PLD6Q8N2A8 252 aaKnown RBP8.04□□□□□ -1.12
UBE3D-205ENST00000503942 NETO1Q8TDF5 533 aa8.04□□□□□ -1.12
UBE3D-205ENST00000503942 TMEM40Q8WWA1 233 aa8.04□□□□□ -1.12
UBE3D-205ENST00000503942 TCF12Q99081 682 aa8.04□□□□□ -1.12
UBE3D-205ENST00000503942 KRTAP4-11Q9BYQ6 195 aa8.04□□□□□ -1.12
UBE3D-205ENST00000503942 SYNGAP1Q96PV0 1343 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 A0A1W2PP55 124 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 BRD1O95696 1058 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 B3GALT4O96024 378 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 RNASE1P07998 156 aaKnown RBP8.03□□□□□ -1.12
UBE3D-205ENST00000503942 CD8BP10966 210 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 SPRED3Q2MJR0 410 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 PHLDB3Q6NSJ2 640 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 AEBP1Q8IUX7 1158 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 KSR1Q8IVT5 923 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 GJD3Q8N144 294 aa8.03□□□□□ -1.12
UBE3D-205ENST00000503942 AOC2O75106 756 aa8.02□□□□□ -1.13
UBE3D-205ENST00000503942 POLR3DP05423 398 aaPredicted RBP8.02□□□□□ -1.13
UBE3D-205ENST00000503942 FAM181AQ8N9Y4 354 aa8.02□□□□□ -1.13
UBE3D-205ENST00000503942 DDX54Q8TDD1 881 aaKnown RBP8.02□□□□□ -1.13
UBE3D-205ENST00000503942 WDR18Q9BV38 432 aa8.02□□□□□ -1.13
UBE3D-205ENST00000503942 LIN7BQ9HAP6 207 aa8.02□□□□□ -1.13
UBE3D-205ENST00000503942 LGR6Q9HBX8 967 aa8.02□□□□□ -1.13
UBE3D-205ENST00000503942 FZD6O60353 706 aa8.01□□□□□ -1.13
UBE3D-205ENST00000503942 AAMPQ13685 434 aa8.01□□□□□ -1.13
UBE3D-205ENST00000503942 GALNT12Q8IXK2 581 aa8.01□□□□□ -1.13
UBE3D-205ENST00000503942 LRRN4CLQ8ND94 238 aa8.01□□□□□ -1.13
UBE3D-205ENST00000503942 VAV3Q9UKW4 847 aa8.01□□□□□ -1.13
UBE3D-205ENST00000503942 PPP1R9AQ9ULJ8 1098 aa8.01□□□□□ -1.13
UBE3D-205ENST00000503942 FAM13AO94988 1023 aa8□□□□□ -1.13
UBE3D-205ENST00000503942 FAM87AP0C7U9 286 aa8□□□□□ -1.13
UBE3D-205ENST00000503942 SSFA2P28290 1259 aa8□□□□□ -1.13
UBE3D-205ENST00000503942 CDK5R2Q13319 367 aa8□□□□□ -1.13
UBE3D-205ENST00000503942 CD96P40200 585 aa7.99□□□□□ -1.13
UBE3D-205ENST00000503942 PRKCQQ04759 706 aa7.99□□□□□ -1.13
UBE3D-205ENST00000503942 KRTAP19-4Q3LI73 84 aa7.99□□□□□ -1.13
UBE3D-205ENST00000503942 PI4K2BQ8TCG2 481 aa7.99□□□□□ -1.13
UBE3D-205ENST00000503942 SLC38A3Q99624 504 aa7.99□□□□□ -1.13
UBE3D-205ENST00000503942 ZNF576Q9H609 170 aa7.99□□□□□ -1.13
UBE3D-205ENST00000503942 U3KQE9 123 aa7.99□□□□□ -1.13
UBE3D-205ENST00000503942 KRTAP9-7A8MTY7 169 aa7.98□□□□□ -1.13
UBE3D-205ENST00000503942 MESP2Q0VG99 397 aa7.98□□□□□ -1.13
UBE3D-205ENST00000503942 PDE3AQ14432 1141 aa7.98□□□□□ -1.13
UBE3D-205ENST00000503942 BHLHE22Q8NFJ8 381 aaPredicted RBP7.98□□□□□ -1.13
UBE3D-205ENST00000503942 ZBTB7CA1YPR0 619 aa7.97□□□□□ -1.13
UBE3D-205ENST00000503942 TMPRSS2O15393 492 aa7.97□□□□□ -1.13
UBE3D-205ENST00000503942 KCNA1Q09470 495 aa7.97□□□□□ -1.13
UBE3D-205ENST00000503942 AP3B2Q13367 1082 aa7.97□□□□□ -1.13
UBE3D-205ENST00000503942 IFI16Q16666 785 aaKnown RBP7.97□□□□□ -1.13
UBE3D-205ENST00000503942 MKNK2Q9HBH9 465 aa7.97□□□□□ -1.13
UBE3D-205ENST00000503942 CCDC87Q9NVE4 849 aa7.97□□□□□ -1.13
UBE3D-205ENST00000503942 CRIM1Q9NZV1 1036 aa7.97□□□□□ -1.13
UBE3D-205ENST00000503942 ITPKAP23677 461 aa7.96□□□□□ -1.14
UBE3D-205ENST00000503942 CILP2Q8IUL8 1156 aa7.96□□□□□ -1.14
UBE3D-205ENST00000503942 FLAD1Q8NFF5 587 aa7.96□□□□□ -1.14
UBE3D-205ENST00000503942 HRASLS5Q96KN8 279 aa7.96□□□□□ -1.14
UBE3D-205ENST00000503942 SF3B2Q13435 895 aaKnown RBP7.95□□□□□ -1.14
UBE3D-205ENST00000503942 AOC3Q16853 763 aa7.95□□□□□ -1.14
UBE3D-205ENST00000503942 KIAA0319Q5VV43 1072 aa7.95□□□□□ -1.14
UBE3D-205ENST00000503942 FAM84AQ96KN4 292 aa7.95□□□□□ -1.14
UBE3D-205ENST00000503942 ATXN3LQ9H3M9 355 aa7.95□□□□□ -1.14
UBE3D-205ENST00000503942 PIDD1Q9HB75 910 aa7.95□□□□□ -1.14
UBE3D-205ENST00000503942 PODXL2Q9NZ53 605 aa7.95□□□□□ -1.14
UBE3D-205ENST00000503942 CEACAM5P06731 702 aa7.94□□□□□ -1.14
UBE3D-205ENST00000503942 OXCT1P55809 520 aa7.94□□□□□ -1.14
UBE3D-205ENST00000503942 TXNDC2Q86VQ3 553 aa7.94□□□□□ -1.14
UBE3D-205ENST00000503942 FANCD2OSQ96PS1 177 aa7.94□□□□□ -1.14
UBE3D-205ENST00000503942 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.94□□□□□ -1.14
UBE3D-205ENST00000503942 LRRC10BA6NIK2 292 aa7.93□□□□□ -1.14
UBE3D-205ENST00000503942 ID3Q02535 119 aa7.93□□□□□ -1.14
UBE3D-205ENST00000503942 ANGEL2Q5VTE6 544 aaKnown RBP7.93□□□□□ -1.14
UBE3D-205ENST00000503942 B4GALNT3Q6L9W6 998 aa7.93□□□□□ -1.14
UBE3D-205ENST00000503942 SLC23A3Q6PIS1 610 aa7.93□□□□□ -1.14
UBE3D-205ENST00000503942 SMYD4Q8IYR2 804 aaPredicted RBP7.93□□□□□ -1.14
UBE3D-205ENST00000503942 WDR89Q96FK6 387 aaPredicted RBP7.93□□□□□ -1.14
UBE3D-205ENST00000503942 CCDC86Q9H6F5 360 aaKnown RBP7.93□□□□□ -1.14
UBE3D-205ENST00000503942 GNEQ9Y223 722 aaKnown RBP7.93□□□□□ -1.14
UBE3D-205ENST00000503942 IVNS1ABPQ9Y6Y0 642 aa7.93□□□□□ -1.14
UBE3D-205ENST00000503942 TMEM265A0A087WTH1 108 aa7.92□□□□□ -1.14
UBE3D-205ENST00000503942 LEFTY1O75610 366 aa7.92□□□□□ -1.14
UBE3D-205ENST00000503942 LIG1P18858 919 aa7.92□□□□□ -1.14
UBE3D-205ENST00000503942 PTPN12Q05209 780 aaKnown RBP7.92□□□□□ -1.14
UBE3D-205ENST00000503942 ZSWIM9Q86XI8 627 aa7.92□□□□□ -1.14
UBE3D-205ENST00000503942 DUSP23Q9BVJ7 150 aa7.92□□□□□ -1.14
UBE3D-205ENST00000503942 GZF1Q9H116 711 aaPredicted RBP7.92□□□□□ -1.14
UBE3D-205ENST00000503942 PLAGL2Q9UPG8 496 aa7.92□□□□□ -1.14
UBE3D-205ENST00000503942 PATL2C9JE40 543 aaKnown RBP7.91□□□□□ -1.14
UBE3D-205ENST00000503942 FKBP4Q02790 459 aaKnown RBP eCLIP7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms