RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 HLA-CQ95604 372 aa6□□□□□ -1.45
USP54-216ENST00000498143 SLC12A5Q9H2X9 1139 aa6□□□□□ -1.45
USP54-216ENST00000498143 SRRDQ9UH36 339 aa6□□□□□ -1.45
USP54-216ENST00000498143 MYO3BQ8WXR4 1341 aa6□□□□□ -1.45
USP54-216ENST00000498143 MS4A1P11836 297 aa6□□□□□ -1.45
USP54-216ENST00000498143 SATB1Q01826 763 aa6□□□□□ -1.45
USP54-216ENST00000498143 TTLL5Q6EMB2 1281 aa6□□□□□ -1.45
USP54-216ENST00000498143 FERMT2Q96AC1 680 aa6□□□□□ -1.45
USP54-216ENST00000498143 WRNIP1Q96S55 665 aa6□□□□□ -1.45
USP54-216ENST00000498143 GNL3LQ9NVN8 582 aaKnown RBP6□□□□□ -1.45
USP54-216ENST00000498143 COG5Q9UP83 839 aa6□□□□□ -1.45
USP54-216ENST00000498143 TONSLQ96HA7 1378 aa6□□□□□ -1.45
USP54-216ENST00000498143 KIF5CO60282 957 aa6□□□□□ -1.45
USP54-216ENST00000498143 SNRPA1P09661 255 aaKnown RBP6□□□□□ -1.45
USP54-216ENST00000498143 HSPA5P11021 654 aaKnown RBP6□□□□□ -1.45
USP54-216ENST00000498143 PTPN12Q05209 780 aaKnown RBP6□□□□□ -1.45
USP54-216ENST00000498143 FLIIQ13045 1269 aa6□□□□□ -1.45
USP54-216ENST00000498143 TBC1D9BQ66K14 1250 aa6□□□□□ -1.45
USP54-216ENST00000498143 ATF7IPQ6VMQ6 1270 aa6□□□□□ -1.45
USP54-216ENST00000498143 MOB2Q70IA6 237 aa6□□□□□ -1.45
USP54-216ENST00000498143 ZNF804AQ7Z570 1209 aa6□□□□□ -1.45
USP54-216ENST00000498143 FAM200AQ8TCP9 573 aa6□□□□□ -1.45
USP54-216ENST00000498143 SLC4A7Q9Y6M7 1214 aa6□□□□□ -1.45
USP54-216ENST00000498143 ZNF142P52746 1687 aaPredicted RBP6□□□□□ -1.45
USP54-216ENST00000498143 DIP2AQ14689 1571 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 CDHR2Q9BYE9 1310 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 ZEB2O60315 1214 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 SRGNP10124 158 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 SLKQ9H2G2 1235 aaPredicted RBP5.99□□□□□ -1.45
USP54-216ENST00000498143 MTUS1Q9ULD2 1270 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 ELNP15502 786 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 PPIGQ13427 754 aaKnown RBP eCLIP5.99□□□□□ -1.45
USP54-216ENST00000498143 RNF180Q86T96 592 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.99□□□□□ -1.45
USP54-216ENST00000498143 ZNF576Q9H609 170 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 TMEM51Q9NW97 253 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 CTNNA3Q9UI47 895 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 CNOT1A5YKK6 2376 aaKnown RBP5.99□□□□□ -1.45
USP54-216ENST00000498143 DAPK1P53355 1430 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 GOLGA6L10A0A0M3HER8 536 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 MSCO60682 206 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 BRD1O95696 1058 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 ZBTB48P10074 688 aaPredicted RBP5.99□□□□□ -1.45
USP54-216ENST00000498143 ITGB8P26012 769 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 FLT3LGP49771 235 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 ZFYVE27Q5T4F4 411 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 RPUSD2Q8IZ73 545 aaKnown RBP5.99□□□□□ -1.45
USP54-216ENST00000498143 TACC3Q9Y6A5 838 aa5.99□□□□□ -1.45
USP54-216ENST00000498143 HMOX1P09601 288 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 CST9Q5W186 159 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 KIAA1211Q6ZU35 1233 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 GPIHBP1Q8IV16 184 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 HERVK_113Q902F9 699 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 OPTNQ96CV9 577 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 GMEB2Q9UKD1 530 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 R3HCC1Q9Y3T6 440 aaKnown RBP5.98□□□□□ -1.45
USP54-216ENST00000498143 MAST1Q9Y2H9 1570 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 CASP8AP2Q9UKL3 1982 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 SOWAHBA6NEL2 793 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 SEMA3EO15041 775 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 FYB1O15117 783 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 CT47B1P0C2W7 299 aaPredicted RBP5.98□□□□□ -1.45
USP54-216ENST00000498143 MTFR1Q15390 333 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 ST3GAL2Q16842 350 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 ARNTL2Q8WYA1 636 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 GLT1D1Q96MS3 346 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 LRFN3Q9BTN0 628 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 MYOZ2Q9NPC6 264 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 COL15A1P39059 1388 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 ATP7BP35670 1465 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 GLI3P10071 1580 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 PIK3C2BO00750 1634 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 ESPNB1AK53 854 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 KCNA5P22460 613 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 IL6STP40189 918 aaPredicted RBP5.98□□□□□ -1.45
USP54-216ENST00000498143 PSEN1P49768 467 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 KIAA0319Q5VV43 1072 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 POTEDQ86YR6 584 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 TRMT44Q8IYL2 757 aaKnown RBP5.98□□□□□ -1.45
USP54-216ENST00000498143 SLC44A5Q8NCS7 719 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 DDX11Q96FC9 970 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 ZIC5Q96T25 663 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 STK31Q9BXU1 1019 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 UNC93B1Q9H1C4 597 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 AS3MTQ9HBK9 375 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 SCAF8Q9UPN6 1271 aaKnown RBP5.98□□□□□ -1.45
USP54-216ENST00000498143 MAP3K19Q56UN5 1328 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 FAM205AQ6ZU69 1335 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 PASKQ96RG2 1323 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 PHKG2P15735 406 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 FPGSQ05932 587 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 SLMAPQ14BN4 828 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 ZRSR1Q15695 479 aaKnown RBP5.98□□□□□ -1.45
USP54-216ENST00000498143 E2F4Q16254 413 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 AP1ARQ63HQ0 302 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 BTN2A1Q7KYR7 527 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 SLF2Q8IX21 1173 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 ACRBPQ8NEB7 543 aa5.98□□□□□ -1.45
USP54-216ENST00000498143 LTBP3Q9NS15 1303 aa5.97□□□□□ -1.45
USP54-216ENST00000498143 USP31Q70CQ4 1352 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms