RNA–Protein interactions for RNA: ENST00000498041.1

RIF1-212, Transcript of replication timing regulatory factor 1, human

TSL 3

Gene RIF1, Length 776 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-212	ENST00000498041	CYP4F12	Q9HCS2	524 aa		4.99	□□□□□ -1.61
RIF1-212	ENST00000498041	CCDC9	Q9Y3X0	531 aa	Known RBP	4.99	□□□□□ -1.61
RIF1-212	ENST00000498041	SAMM50	Q9Y512	469 aa		4.99	□□□□□ -1.61
RIF1-212	ENST00000498041	KRTAP4-8	A0A0G2JLE6	195 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	ENC1	O14682	589 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	SART1	O43290	800 aa	Known RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	MED26	O95402	600 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	ECEL1	O95672	775 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	TGFB1	P01137	390 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	CTSB	P07858	339 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	GSTP1	P09211	210 aa	Known RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	ZNF16	P17020	682 aa	Predicted RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	TAL1	P17542	331 aa	Predicted RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	ARNT	P27540	789 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	HNRNPU	Q00839	825 aa	Known RBP eCLIP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	PDE3A	Q14432	1141 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	UVSSA	Q2YD98	709 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	SV2B	Q7L1I2	683 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	SULF2	Q8IWU5	870 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	C12orf50	Q8NA57	414 aa	Predicted RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	UBL7	Q96S82	380 aa	Predicted RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	EMILIN2	Q9BXX0	1053 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	RAD18	Q9NS91	495 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	VTI1B	Q9UEU0	232 aa		4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	OAS3	Q9Y6K5	1087 aa	Known RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	COL17A1	Q9UMD9	1497 aa	Predicted RBP	4.98	□□□□□ -1.61
RIF1-212	ENST00000498041	RBM47	A0AV96	593 aa	Known RBP	4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	CTSH	P09668	335 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	TAF1C	Q15572	869 aa	Predicted RBP	4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	PDZD3	Q86UT5	571 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	STK35	Q8TDR2	534 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	KCNB2	Q92953	911 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	CRELD1	Q96HD1	420 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	FAM46A	Q96IP4	442 aa	Known RBP	4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	ZC3H12C	Q9C0D7	883 aa	Known RBP	4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	KRT82	Q9NSB4	513 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	STOML1	Q9UBI4	398 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	RAX	Q9Y2V3	346 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	RNF114	Q9Y508	228 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	SYNGAP1	Q96PV0	1343 aa		4.97	□□□□□ -1.61
RIF1-212	ENST00000498041	USP31	Q70CQ4	1352 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	AOC2	O75106	756 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	PAGE1	O75459	146 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	TIAF1	O95411	115 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	CELA3A	P09093	270 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	YBX3	P16989	372 aa	Known RBP eCLIP	4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	BMP6	P22004	513 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	PREP	P48147	710 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	ST13	P50502	369 aa	Known RBP	4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	GP2	P55259	537 aa	Known RBP	4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	SOX4	Q06945	474 aa	Predicted RBP	4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	LRRC14	Q15048	493 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	CCDC85B	Q15834	202 aa	Predicted RBP	4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	MEI1	Q5TIA1	1274 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	SLC51A	Q86UW1	340 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	RGS22	Q8NE09	1264 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	UTP4	Q969X6	686 aa	Known RBP	4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	CCDC86	Q9H6F5	360 aa	Known RBP	4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	CBX8	Q9HC52	389 aa		4.96	□□□□□ -1.62
RIF1-212	ENST00000498041	DHX15	O43143	795 aa	Known RBP	4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	GAS2	O43903	313 aa	Known RBP	4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	IGLV1-40	P01703	118 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	SLFN14	P0C7P3	912 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	ADH5	P11766	374 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	DRD2	P14416	443 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	LIG1	P18858	919 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	CD97	P48960	835 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	ZNF252P-AS1	Q0IIN9	211 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	MRPL58	Q14197	206 aa	Known RBP	4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	AKAP4	Q5JQC9	854 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	PCNX4	Q63HM2	1172 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	MAP1S	Q66K74	1059 aa	Predicted RBP	4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	ARMC10	Q8N2F6	343 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	MYRFL	Q96LU7	910 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	WDR18	Q9BV38	432 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	NOC4L	Q9BVI4	516 aa	Known RBP	4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	CYP8B1	Q9UNU6	501 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	HIF3A	Q9Y2N7	669 aa		4.95	□□□□□ -1.62
RIF1-212	ENST00000498041	ZNF862	O60290	1169 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	RLBP1	P12271	317 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	BMP3	P12645	472 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	KIF4B	Q2VIQ3	1234 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	SCARA3	Q6AZY7	606 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	TTBK2	Q6IQ55	1244 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	LLGL2	Q6P1M3	1020 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	FAM20C	Q8IXL6	584 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	C2CD4A	Q8NCU7	369 aa	Predicted RBP	4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	GRIN3A	Q8TCU5	1115 aa		4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	WDR89	Q96FK6	387 aa	Predicted RBP	4.94	□□□□□ -1.62
RIF1-212	ENST00000498041	TRIM37	O94972	964 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	USP11	P51784	963 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	RPS26	P62854	115 aa	Known RBP	4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	RASIP1	Q5U651	963 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	DYM	Q7RTS9	669 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	GPBAR1	Q8TDU6	330 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	ACSBG1	Q96GR2	724 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	CACNA2D2	Q9NY47	1150 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	PODXL2	Q9NZ53	605 aa		4.93	□□□□□ -1.62
RIF1-212	ENST00000498041	AP4E1	Q9UPM8	1137 aa		4.93	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms