RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TPCN1Q9ULQ1 816 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 E7EWF7 191 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 RHOXF2BP0C7M4 288 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 GSTO1P78417 241 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 PPP2R3AQ06190 1150 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 HEATR3Q7Z4Q2 680 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 RHOXF2Q9BQY4 288 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 LSG1Q9H089 658 aaKnown RBP18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 WWC3Q9ULE0 1092 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 ARHGEF40Q8TER5 1519 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 CYP27B1O15528 508 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 TTC6Q86TZ1 520 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 MTMR6Q9Y217 621 aa18.54■□□□□ 0.56
CCDC88B-209ENST00000494080 TRIM75PA6NK02 468 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 RIMBP2O15034 1052 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 PTPRMP28827 1452 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 OAS2P29728 719 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 CTSWP56202 376 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 FAM160A1Q05DH4 1040 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 PLCD4Q9BRC7 762 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 CARD10Q9BWT7 1032 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 ZBTB1Q9Y2K1 713 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 CPSF1Q10570 1443 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 DIP2CQ9Y2E4 1556 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 ZFYVE27Q5T4F4 411 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 PHKBQ93100 1093 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 WDR17Q8IZU2 1322 aa18.53■□□□□ 0.56
CCDC88B-209ENST00000494080 LDHBP07195 334 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 CTDSPL2Q05D32 466 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 ZSCAN26Q16670 478 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 TRAPPC3LQ5T215 181 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 TRMT1LQ7Z2T5 733 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 ZBTB38Q8NAP3 1195 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 RAB34Q9BZG1 259 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 ZC3H12CQ9C0D7 883 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 CUL4AQ13619 759 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 ZNF804AQ7Z570 1209 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 SPATA5Q8NB90 893 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 DHX58Q96C10 678 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 KIF2CQ99661 725 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 HAUS7Q99871 368 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 GREM2Q9H772 168 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 HMGB2P26583 209 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 TMEM266Q2M3C6 531 aa18.52■□□□□ 0.56
CCDC88B-209ENST00000494080 CCDC175P0C221 793 aa18.52■□□□□ 0.55
CCDC88B-209ENST00000494080 ZSWIM6Q9HCJ5 1215 aa18.52■□□□□ 0.55
CCDC88B-209ENST00000494080 SASH1O94885 1247 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 HLA-DOAP06340 250 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 ADORA1P30542 326 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 CLEC17AQ6ZS10 378 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 CACTINQ8WUQ7 758 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 UBA5Q9GZZ9 404 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.51■□□□□ 0.558e-7■■□□□ 13.8
CCDC88B-209ENST00000494080 HSPD1P10809 573 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 HIBADHP31937 336 aaKnown RBP18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 BRAPQ7Z569 592 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 SSH2Q76I76 1423 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 NR1I2O75469 434 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 ZNF589Q86UQ0 364 aaPredicted RBP18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 LRRC8AQ8IWT6 810 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 KIDINS220Q9ULH0 1771 aa18.51■□□□□ 0.55
CCDC88B-209ENST00000494080 CNBD1Q8NA66 436 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 DENND2AQ9ULE3 1009 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 CAMSAP1Q5T5Y3 1602 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 PCCAP05165 728 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 KANK3Q6NY19 840 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 CEP112Q8N8E3 955 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 ANKRD2Q9GZV1 360 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 ZNF335Q9H4Z2 1342 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 ENOX2Q16206 610 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 DSCC1Q9BVC3 393 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 ANKARQ7Z5J8 1434 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 NCBP1Q09161 790 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 MAP4K1Q92918 833 aa18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 LLPHQ9BRT6 129 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-209ENST00000494080 YEATS4O95619 227 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 DNA2P51530 1060 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 CABP5Q9NP86 173 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 ZDHHC9Q9Y397 364 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 NBPF11Q86T75 865 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 NEXMIFQ5QGS0 1516 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 MATR3P43243 847 aaKnown RBP eCLIP18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 PTPN12Q05209 780 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 SMC1AQ14683 1233 aaKnown RBP18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 TMEM87BQ96K49 555 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 MRVI1Q9Y6F6 885 aa18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 NAA30Q147X3 362 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 AATFQ9NY61 560 aaKnown RBP eCLIP18.49■□□□□ 0.55
CCDC88B-209ENST00000494080 LAMC1P11047 1609 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 IGKV5-2P06315 115 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 POLA2Q14181 598 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 SPA17Q15506 151 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 EPHA10Q5JZY3 1008 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 HDXQ7Z353 690 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 BAG1Q99933 345 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 CTAGE9A4FU28 777 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 N4BP3O15049 544 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 ZBTB22O15209 634 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 KCNQ4P56696 695 aa18.48■□□□□ 0.55
CCDC88B-209ENST00000494080 ZNF569Q5MCW4 686 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 126.4 ms