RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 BRI3BPQ8WY22 251 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 HOOK2Q96ED9 719 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 MS4A4AQ96JQ5 239 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 TRIM17Q9Y577 477 aa16.94■□□□□ 0.3
COL6A3-211ENST00000491233 IPO8O15397 1037 aaKnown RBP16.93■□□□□ 0.3
COL6A3-211ENST00000491233 BCAR3O75815 825 aa16.93■□□□□ 0.3
COL6A3-211ENST00000491233 GTF2A2P52657 109 aa16.93■□□□□ 0.3
COL6A3-211ENST00000491233 MTX1Q13505 466 aa16.93■□□□□ 0.3
COL6A3-211ENST00000491233 DCAF15Q66K64 600 aa16.93■□□□□ 0.3
COL6A3-211ENST00000491233 CDC42EP5Q6NZY7 148 aa16.93■□□□□ 0.3
COL6A3-211ENST00000491233 FRAT1Q92837 279 aaPredicted RBP16.93■□□□□ 0.3
COL6A3-211ENST00000491233 ERO1AQ96HE7 468 aa16.93■□□□□ 0.3
COL6A3-211ENST00000491233 ZSWIM8A7E2V4 1837 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 TCP10Q12799 353 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 NFIAQ12857 509 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 ATF7IPQ6VMQ6 1270 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 OTOP1Q7RTM1 612 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 CD99L2Q8TCZ2 262 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 FAM151AQ8WW52 585 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 ZKSCAN4Q969J2 545 aaPredicted RBP16.92■□□□□ 0.3
COL6A3-211ENST00000491233 ZNF341Q9BYN7 854 aa16.92■□□□□ 0.3
COL6A3-211ENST00000491233 RBBP6Q7Z6E9 1792 aaKnown RBP16.92■□□□□ 0.3
COL6A3-211ENST00000491233 A0A1B0GUL7 405 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 ZBTB22O15209 634 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 TIMM10P62072 90 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 TFCP2Q12800 502 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 RASGRF1Q13972 1273 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 TAF1CQ15572 869 aaPredicted RBP16.91■□□□□ 0.3
COL6A3-211ENST00000491233 MIGA2Q7L4E1 593 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 ERO1BQ86YB8 467 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 ZGPATQ8N5A5 531 aaKnown RBP16.91■□□□□ 0.3
COL6A3-211ENST00000491233 CLUAP1Q96AJ1 413 aa16.91■□□□□ 0.3
COL6A3-211ENST00000491233 FAM43AQ8N2R8 423 aa16.9■□□□□ 0.3
COL6A3-211ENST00000491233 XAGE2Q96GT9 111 aa16.9■□□□□ 0.3
COL6A3-211ENST00000491233 USP40Q9NVE5 1235 aa16.9■□□□□ 0.3
COL6A3-211ENST00000491233 FAM198AQ9UFP1 575 aa16.9■□□□□ 0.3
COL6A3-211ENST00000491233 PDS5AQ29RF7 1337 aaKnown RBP16.9■□□□□ 0.3
COL6A3-211ENST00000491233 RFX7Q2KHR2 1363 aa16.89■□□□□ 0.3
COL6A3-211ENST00000491233 MAST2Q6P0Q8 1798 aa16.89■□□□□ 0.3
COL6A3-211ENST00000491233 DOCK1Q14185 1865 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 GNAI2P04899 355 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 INPP5BP32019 993 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 SP3Q02447 781 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 PPIL2Q13356 520 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 MVPQ14764 893 aaKnown RBP16.89■□□□□ 0.29
COL6A3-211ENST00000491233 DZIP1Q86YF9 867 aaKnown RBP16.89■□□□□ 0.29
COL6A3-211ENST00000491233 ZFYVE28Q9HCC9 887 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 ABCF2Q9UG63 623 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 AKAP2Q9Y2D5 859 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.89■□□□□ 0.29
COL6A3-211ENST00000491233 GAKO14976 1311 aa16.89■□□□□ 0.29
COL6A3-211ENST00000491233 TNRC18O15417 2968 aaPredicted RBP16.88■□□□□ 0.29
COL6A3-211ENST00000491233 PNMA6EA0A0J9YXQ4 647 aa16.88■□□□□ 0.29
COL6A3-211ENST00000491233 IRF6O14896 467 aa16.88■□□□□ 0.29
COL6A3-211ENST00000491233 CETPP11597 493 aa16.88■□□□□ 0.29
COL6A3-211ENST00000491233 HNRNPUQ00839 825 aaKnown RBP eCLIP16.88■□□□□ 0.29
COL6A3-211ENST00000491233 CAP1Q01518 475 aa16.88■□□□□ 0.29
COL6A3-211ENST00000491233 TMEM57Q8N5G2 664 aa16.88■□□□□ 0.29
COL6A3-211ENST00000491233 SNAPC2Q13487 334 aa16.87■□□□□ 0.29
COL6A3-211ENST00000491233 ZKSCAN2Q63HK3 967 aa16.87■□□□□ 0.29
COL6A3-211ENST00000491233 NEUROD6Q96NK8 337 aa16.87■□□□□ 0.29
COL6A3-211ENST00000491233 EFCC1Q9HA90 598 aa16.87■□□□□ 0.29
COL6A3-211ENST00000491233 PTPN22Q9Y2R2 807 aa16.87■□□□□ 0.29
COL6A3-211ENST00000491233 ATRNL1Q5VV63 1379 aa16.87■□□□□ 0.29
COL6A3-211ENST00000491233 PTPRFP10586 1907 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 PDE4DIPQ5VU43 2346 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 BTBD19C9JJ37 291 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 RGS3P49796 1198 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 PPATQ06203 517 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 ZFPM1Q8IX07 1006 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 MIER1Q8N108 512 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 ZCCHC17Q9NP64 241 aaKnown RBP16.86■□□□□ 0.29
COL6A3-211ENST00000491233 ZNF112Q9UJU3 913 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 MROH7-TTC4A0A0A0MT08 1334 aa16.86■□□□□ 0.29
COL6A3-211ENST00000491233 ENTPD3O75355 529 aa16.85■□□□□ 0.29
COL6A3-211ENST00000491233 WDHD1O75717 1129 aaPredicted RBP16.85■□□□□ 0.29
COL6A3-211ENST00000491233 BTDP43251 543 aa16.85■□□□□ 0.29
COL6A3-211ENST00000491233 G3BP1Q13283 466 aaKnown RBP eCLIP16.85■□□□□ 0.29
COL6A3-211ENST00000491233 NOL9Q5SY16 702 aaKnown RBP16.85■□□□□ 0.29
COL6A3-211ENST00000491233 SPTY2D1Q68D10 685 aaPredicted RBP16.85■□□□□ 0.29
COL6A3-211ENST00000491233 PI16Q6UXB8 463 aa16.85■□□□□ 0.29
COL6A3-211ENST00000491233 ERICH6Q7L0X2 663 aa16.85■□□□□ 0.29
COL6A3-211ENST00000491233 SLF2Q8IX21 1173 aa16.85■□□□□ 0.29
COL6A3-211ENST00000491233 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.85■□□□□ 0.29
COL6A3-211ENST00000491233 IDI2Q9BXS1 227 aa16.85■□□□□ 0.29
COL6A3-211ENST00000491233 PHIPQ8WWQ0 1821 aa16.84■□□□□ 0.29
COL6A3-211ENST00000491233 ATAD5Q96QE3 1844 aa16.84■□□□□ 0.29
COL6A3-211ENST00000491233 GORABQ5T7V8 394 aa16.84■□□□□ 0.29
COL6A3-211ENST00000491233 HMG20BQ9P0W2 317 aa16.84■□□□□ 0.29
COL6A3-211ENST00000491233 MYO5AQ9Y4I1 1855 aaKnown RBP16.84■□□□□ 0.29
COL6A3-211ENST00000491233 TLR2O60603 784 aa16.83■□□□□ 0.28
COL6A3-211ENST00000491233 ARID4AP29374 1257 aaPredicted RBP16.83■□□□□ 0.28
COL6A3-211ENST00000491233 MECOMQ03112 1051 aa16.83■□□□□ 0.28
COL6A3-211ENST00000491233 PICALMQ13492 652 aa16.83■□□□□ 0.28
COL6A3-211ENST00000491233 ZSCAN29Q8IWY8 852 aaPredicted RBP16.83■□□□□ 0.28
COL6A3-211ENST00000491233 FAM163AQ96GL9 167 aaPredicted RBP16.83■□□□□ 0.28
COL6A3-211ENST00000491233 CDK5RAP2Q96SN8 1893 aa16.83■□□□□ 0.28
COL6A3-211ENST00000491233 DDX4Q9NQI0 724 aaKnown RBP16.83■□□□□ 0.28
COL6A3-211ENST00000491233 KCNH4Q9UQ05 1017 aa16.83■□□□□ 0.28
COL6A3-211ENST00000491233 HTTP42858 3142 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms