RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 A0A087WUV0 522 aaPredicted RBP12.18□□□□□ -0.46
CCDC171-208ENST00000486641 SLC39A14Q15043 492 aa12.18□□□□□ -0.46
CCDC171-208ENST00000486641 DNAJC21Q5F1R6 531 aaKnown RBP12.18□□□□□ -0.46
CCDC171-208ENST00000486641 ZNF569Q5MCW4 686 aa12.18□□□□□ -0.46
CCDC171-208ENST00000486641 SHC4Q6S5L8 630 aa12.18□□□□□ -0.46
CCDC171-208ENST00000486641 DDX46Q7L014 1031 aaKnown RBP12.18□□□□□ -0.46
CCDC171-208ENST00000486641 BRAPQ7Z569 592 aa12.18□□□□□ -0.46
CCDC171-208ENST00000486641 METTL16Q86W50 562 aaKnown RBP12.18□□□□□ -0.46
CCDC171-208ENST00000486641 USHBP1Q8N6Y0 703 aa12.18□□□□□ -0.46
CCDC171-208ENST00000486641 ADGRG1Q9Y653 693 aa12.18□□□□□ -0.46
CCDC171-208ENST00000486641 SYF2O95926 243 aaKnown RBP12.17□□□□□ -0.46
CCDC171-208ENST00000486641 KIF4BQ2VIQ3 1234 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 RAD9BQ6WBX8 426 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 MED4Q9NPJ6 270 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 PCDHA5Q9Y5H7 936 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 CEMIPQ8WUJ3 1361 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 KIF5CO60282 957 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 RNF40O75150 1001 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 GSCP56915 257 aaPredicted RBP12.17□□□□□ -0.46
CCDC171-208ENST00000486641 LONRF3Q496Y0 759 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 CCDC91Q7Z6B0 441 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 UTYO14607 1347 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 NWD1Q149M9 1564 aa12.17□□□□□ -0.46
CCDC171-208ENST00000486641 TECPR2O15040 1411 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 ROBO2Q9HCK4 1378 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 PRR29P0C7W0 189 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 HOXC9P31274 260 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 LINS1Q8NG48 757 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 AFAP1L1Q8TED9 768 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 CEP89Q96ST8 783 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 FOXN1O15353 648 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 ZNF18P17022 549 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 TUBB4BP68371 445 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 KIF23Q02241 960 aaPredicted RBP12.16□□□□□ -0.46
CCDC171-208ENST00000486641 FMR1Q06787 632 aaKnown RBP eCLIP12.16□□□□□ -0.46
CCDC171-208ENST00000486641 TFCP2Q12800 502 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 TNNI3KQ59H18 835 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 ARHGEF25Q86VW2 580 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 KAT2BQ92831 832 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 CLIC6Q96NY7 704 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 TEX13AQ9BXU3 409 aaPredicted RBP12.16□□□□□ -0.46
CCDC171-208ENST00000486641 GBP3Q9H0R5 595 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 NFE2L3Q9Y4A8 694 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 FPGT-TNNI3KV9GXZ4 949 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 TOPAZ1Q8N9V7 1692 aa12.16□□□□□ -0.46
CCDC171-208ENST00000486641 CTAGE9A4FU28 777 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 BTBD11A6QL63 1104 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 AKR1B15C9JRZ8 316 aaPredicted RBP12.15□□□□□ -0.46
CCDC171-208ENST00000486641 PRPF6O94906 941 aaKnown RBP12.15□□□□□ -0.46
CCDC171-208ENST00000486641 EIF5P55010 431 aaKnown RBP12.15□□□□□ -0.46
CCDC171-208ENST00000486641 TUBB2AQ13885 445 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 NR1I3Q14994 352 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 CT47A1Q5JQC4 288 aaPredicted RBP12.15□□□□□ -0.46
CCDC171-208ENST00000486641 EPHA10Q5JZY3 1008 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 SLC35F6Q8N357 371 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 NOA1Q8NC60 698 aaKnown RBP12.15□□□□□ -0.46
CCDC171-208ENST00000486641 HAUS7Q99871 368 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 TUBB2BQ9BVA1 445 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 ACBD3Q9H3P7 528 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 CXorf56Q9H5V9 222 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 RAI14Q9P0K7 980 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 SH3TC1Q8TE82 1336 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 CTAGE15A4D2H0 777 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 EXOC5O00471 708 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 ABL1P00519 1130 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 CTAGE8P0CG41 777 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 PLEKHO1Q53GL0 409 aaPredicted RBP12.15□□□□□ -0.46
CCDC171-208ENST00000486641 CTAGE6Q86UF2 777 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 RAB11FIP4Q86YS3 637 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 CTAGE4Q8IX94 777 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 PANX2Q96RD6 677 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 DBNDD2Q9BQY9 259 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 DSCC1Q9BVC3 393 aa12.15□□□□□ -0.46
CCDC171-208ENST00000486641 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 RFX7Q2KHR2 1363 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 PRAMEF22A3QJZ6 481 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 HSPD1P10809 573 aaKnown RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 AIMP1Q12904 312 aaKnown RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 RESP18Q5W5W9 173 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 CCDC102BQ68D86 513 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 CYB5RLQ6IPT4 315 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 TRMT44Q8IYL2 757 aaKnown RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 CPLX3Q8WVH0 158 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 CDC5LQ99459 802 aaKnown RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 SAMSN1Q9NSI8 373 aaKnown RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 CCDC9Q9Y3X0 531 aaKnown RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 KDM3BQ7LBC6 1761 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 MRC1P22897 1456 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 FAM237AA0A1B0GTK4 181 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 TEX33O43247 280 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 PPP6R2O75170 966 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 ERLIN2O94905 339 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 AARSP49588 968 aaKnown RBP eCLIP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 LIG3P49916 1009 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 MDM2Q00987 491 aaPredicted RBP12.14□□□□□ -0.47
CCDC171-208ENST00000486641 RBL2Q08999 1139 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 PTPAQ15257 358 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 TTLL5Q6EMB2 1281 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 IGSF22Q8N9C0 903 aa12.14□□□□□ -0.47
CCDC171-208ENST00000486641 KBTBD3Q8NAB2 608 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms