RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 UPF2Q9HAU5 1272 aaKnown RBP21.26■□□□□ 0.99
SMARCD3-212ENST00000485610 AATFQ9NY61 560 aaKnown RBP eCLIP21.26■□□□□ 0.99
SMARCD3-212ENST00000485610 MYH1P12882 1939 aa21.25■□□□□ 0.99
SMARCD3-212ENST00000485610 EPB41L2O43491 1005 aaKnown RBP21.25■□□□□ 0.99
SMARCD3-212ENST00000485610 GNAT2P19087 354 aa21.25■□□□□ 0.99
SMARCD3-212ENST00000485610 GMPSP49915 693 aaPredicted RBP21.25■□□□□ 0.99
SMARCD3-212ENST00000485610 PPP4CP60510 307 aa21.25■□□□□ 0.99
SMARCD3-212ENST00000485610 DPF2Q92785 391 aa21.25■□□□□ 0.99
SMARCD3-212ENST00000485610 ZDHHC15Q96MV8 337 aa21.25■□□□□ 0.99
SMARCD3-212ENST00000485610 DDX60LQ5H9U9 1706 aaKnown RBP21.24■□□□□ 0.99
SMARCD3-212ENST00000485610 PLCG2P16885 1265 aa21.24■□□□□ 0.99
SMARCD3-212ENST00000485610 DYNLL1P63167 89 aaKnown RBP21.24■□□□□ 0.99
SMARCD3-212ENST00000485610 DSCC1Q9BVC3 393 aa21.24■□□□□ 0.99
SMARCD3-212ENST00000485610 CRNKL1Q9BZJ0 848 aaKnown RBP21.23■□□□□ 0.99
SMARCD3-212ENST00000485610 RPAP1Q9BWH6 1393 aaPredicted RBP21.22■□□□□ 0.99
SMARCD3-212ENST00000485610 HSPD1P10809 573 aaKnown RBP21.22■□□□□ 0.99
SMARCD3-212ENST00000485610 RBM5P52756 815 aaKnown RBP eCLIP21.22■□□□□ 0.99
SMARCD3-212ENST00000485610 PTH1RQ03431 593 aa21.22■□□□□ 0.99
SMARCD3-212ENST00000485610 CFAP100Q494V2 611 aa21.22■□□□□ 0.99
SMARCD3-212ENST00000485610 VPS53Q5VIR6 699 aa21.22■□□□□ 0.99
SMARCD3-212ENST00000485610 SCN4AP35499 1836 aa21.22■□□□□ 0.99
SMARCD3-212ENST00000485610 ZNF280AP59817 542 aaPredicted RBP21.21■□□□□ 0.99
SMARCD3-212ENST00000485610 USP26Q9BXU7 913 aa21.21■□□□□ 0.99
SMARCD3-212ENST00000485610 SLC4A4Q9Y6R1 1079 aa21.21■□□□□ 0.99
SMARCD3-212ENST00000485610 FOXP2O15409 715 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 APOBEC3HQ6NTF7 200 aaKnown RBP21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 MICALL2Q8IY33 904 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 MTMR14Q8NCE2 650 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 SH3RF3Q8TEJ3 882 aaPredicted RBP21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 MAP4K1Q92918 833 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 ZMYM6O95789 1325 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 RHBDL3P58872 404 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 DLGAP5Q15398 846 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 DPY19L2Q6NUT2 758 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 TEX11Q8IYF3 940 aa21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 U3KPZ7 1027 aaPredicted RBP21.2■□□□□ 0.98
SMARCD3-212ENST00000485610 UTRNP46939 3433 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 WDR90Q96KV7 1748 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 SPDYE2BA6NHP3 402 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 PATL2C9JE40 543 aaKnown RBP21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 DDNO94850 711 aaPredicted RBP21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 APPP05067 770 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 SPDYE6P0CI01 402 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 NACAP1Q9BZK3 213 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 MYOZ2Q9NPC6 264 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 GPRC5DQ9NZD1 345 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 CNOT7Q9UIV1 285 aaKnown RBP21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 PCDHAC2Q9Y5I4 1007 aa21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 RBM8AQ9Y5S9 174 aaKnown RBP21.19■□□□□ 0.98
SMARCD3-212ENST00000485610 SHTN1A0MZ66 631 aa21.18■□□□□ 0.98
SMARCD3-212ENST00000485610 GSG1L2A8MUP6 293 aa21.18■□□□□ 0.98
SMARCD3-212ENST00000485610 PRKAB2O43741 272 aa21.18■□□□□ 0.98
SMARCD3-212ENST00000485610 MCCP23508 829 aa21.18■□□□□ 0.98
SMARCD3-212ENST00000485610 CDC42EP5Q6NZY7 148 aa21.18■□□□□ 0.98
SMARCD3-212ENST00000485610 SDR42E1Q8WUS8 393 aa21.18■□□□□ 0.98
SMARCD3-212ENST00000485610 EPB41L4AQ9HCS5 686 aaPredicted RBP21.18■□□□□ 0.98
SMARCD3-212ENST00000485610 H7C1D1 291 aa21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 LMOD1P29536 600 aaPredicted RBP21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 ALX1Q15699 326 aa21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 GIMAP6Q6P9H5 292 aa21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 DDRGK1Q96HY6 314 aa21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 C22orf23Q9BZE7 217 aa21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 ATP8A2Q9NTI2 1148 aa21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 USP40Q9NVE5 1235 aa21.17■□□□□ 0.98
SMARCD3-212ENST00000485610 MYH8P13535 1937 aa21.16■□□□□ 0.98
SMARCD3-212ENST00000485610 USP5P45974 858 aa21.16■□□□□ 0.98
SMARCD3-212ENST00000485610 IFNL3Q8IZI9 196 aa21.16■□□□□ 0.98
SMARCD3-212ENST00000485610 ZBED3Q96IU2 234 aaPredicted RBP21.16■□□□□ 0.98
SMARCD3-212ENST00000485610 L3MBTL3Q96JM7 780 aaPredicted RBP21.16■□□□□ 0.98
SMARCD3-212ENST00000485610 NAPBQ9H115 298 aa21.16■□□□□ 0.98
SMARCD3-212ENST00000485610 CTNNA3Q9UI47 895 aa21.16■□□□□ 0.98
SMARCD3-212ENST00000485610 GLTPD2A6NH11 291 aa21.15■□□□□ 0.98
SMARCD3-212ENST00000485610 HSPA4P34932 840 aa21.15■□□□□ 0.98
SMARCD3-212ENST00000485610 TDO2P48775 406 aa21.15■□□□□ 0.98
SMARCD3-212ENST00000485610 PRMT6Q96LA8 375 aaPredicted RBP21.15■□□□□ 0.98
SMARCD3-212ENST00000485610 TBC1D32Q96NH3 1257 aa21.15■□□□□ 0.98
SMARCD3-212ENST00000485610 TMOD2Q9NZR1 351 aa21.15■□□□□ 0.98
SMARCD3-212ENST00000485610 FLT1P17948 1338 aa21.14■□□□□ 0.98
SMARCD3-212ENST00000485610 WDHD1O75717 1129 aaPredicted RBP21.14■□□□□ 0.98
SMARCD3-212ENST00000485610 FGAP02671 866 aa21.14■□□□□ 0.98
SMARCD3-212ENST00000485610 KIF4BQ2VIQ3 1234 aa21.14■□□□□ 0.98
SMARCD3-212ENST00000485610 TGFBRAP1Q8WUH2 860 aa21.14■□□□□ 0.98
SMARCD3-212ENST00000485610 DCP1AQ9NPI6 582 aaPredicted RBP21.14■□□□□ 0.98
SMARCD3-212ENST00000485610 WNT10BO00744 389 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 MYO1BO43795 1136 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 RBM25P49756 843 aaKnown RBP21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 NECTIN1Q15223 517 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 RNF20Q5VTR2 975 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 TDRD3Q9H7E2 651 aaKnown RBP21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 POLR2AP24928 1970 aaKnown RBP21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 EPS15P42566 896 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 SPDYE2Q495Y8 402 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 TBC1D10BQ4KMP7 808 aaPredicted RBP21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 CREB3L3Q68CJ9 461 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 SAMD7Q7Z3H4 446 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 MAPKAPK5Q8IW41 473 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 IDI2Q9BXS1 227 aa21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 ARPP21Q9UBL0 812 aaPredicted RBP21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 MKRN1Q9UHC7 482 aaKnown RBP21.13■□□□□ 0.97
SMARCD3-212ENST00000485610 NPM3O75607 178 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms