RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 GSX1Q9H4S2 264 aaPredicted RBP6.59□□□□□ -1.35
VPS50-217ENST00000485140 ANGEL1Q9UNK9 670 aaKnown RBP6.59□□□□□ -1.35
VPS50-217ENST00000485140 AP4E1Q9UPM8 1137 aa6.59□□□□□ -1.35
VPS50-217ENST00000485140 PRR19A6NJB7 356 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 PAX4O43316 350 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 ASPAP45381 313 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 GRM2Q14416 872 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 ENOX2Q16206 610 aaKnown RBP6.58□□□□□ -1.36
VPS50-217ENST00000485140 CYP27C1Q4G0S4 372 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 AKAP4Q5JQC9 854 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 DYMQ7RTS9 669 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 VSIG10LQ86VR7 867 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 FBLIM1Q8WUP2 373 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 MFSD14AQ96MC6 490 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 TBC1D32Q96NH3 1257 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 PIDD1Q9HB75 910 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 TIMELESSQ9UNS1 1208 aa6.58□□□□□ -1.36
VPS50-217ENST00000485140 AOC2O75106 756 aa6.57□□□□□ -1.36
VPS50-217ENST00000485140 PRNPP04156 253 aa6.57□□□□□ -1.36
VPS50-217ENST00000485140 DSC3Q14574 896 aa6.57□□□□□ -1.36
VPS50-217ENST00000485140 TRIM56Q9BRZ2 755 aaKnown RBP6.57□□□□□ -1.36
VPS50-217ENST00000485140 ACSS3Q9H6R3 686 aa6.57□□□□□ -1.36
VPS50-217ENST00000485140 PRKAG2Q9UGJ0 569 aa6.57□□□□□ -1.36
VPS50-217ENST00000485140 GPN3Q9UHW5 284 aaPredicted RBP6.57□□□□□ -1.36
VPS50-217ENST00000485140 SPG7Q9UQ90 795 aa6.57□□□□□ -1.36
VPS50-217ENST00000485140 ACTL7BQ9Y614 415 aa6.57□□□□□ -1.36
VPS50-217ENST00000485140 COL17A1Q9UMD9 1497 aaPredicted RBP6.56□□□□□ -1.36
VPS50-217ENST00000485140 PNMA6FA0A0J9YX94 578 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 BTBD11A6QL63 1104 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 DLGAP3O95886 979 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 GSTP1P09211 210 aaKnown RBP6.56□□□□□ -1.36
VPS50-217ENST00000485140 ITGAEP38570 1179 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 GP2P55259 537 aaKnown RBP6.56□□□□□ -1.36
VPS50-217ENST00000485140 ID3Q02535 119 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 COL19A1Q14993 1142 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 KIF4BQ2VIQ3 1234 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 MCTP1Q6DN14 999 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 STK11IPQ8N1F8 1099 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 AGBL5Q8NDL9 886 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 ASB16Q96NS5 453 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 TRAIPQ9BWF2 469 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 BCO2Q9BYV7 579 aa6.56□□□□□ -1.36
VPS50-217ENST00000485140 BSDC1Q9NW68 430 aaPredicted RBP6.56□□□□□ -1.36
VPS50-217ENST00000485140 CYP26A1O43174 497 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 F13BP05160 661 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 DRD2P14416 443 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 RAB6AP20340 208 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 FCGRTP55899 365 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 LRRC14Q15048 493 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 CDPF1Q6NVV7 123 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 FBXL6Q8N531 539 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 GLIS3Q8NEA6 775 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 EPS8L3Q8TE67 593 aaKnown RBP6.55□□□□□ -1.36
VPS50-217ENST00000485140 MISP3Q96FF7 219 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 WDR18Q9BV38 432 aa6.55□□□□□ -1.36
VPS50-217ENST00000485140 NME2P22392 152 aa6.54□□□□□ -1.36
VPS50-217ENST00000485140 FMR1Q06787 632 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS50-217ENST00000485140 DIEXFQ68CQ4 756 aaKnown RBP6.54□□□□□ -1.36
VPS50-217ENST00000485140 SEMA6CQ9H3T2 930 aa6.54□□□□□ -1.36
VPS50-217ENST00000485140 NFICP08651 508 aa6.53□□□□□ -1.36
VPS50-217ENST00000485140 ARNTP27540 789 aa6.53□□□□□ -1.36
VPS50-217ENST00000485140 TXKP42681 527 aa6.53□□□□□ -1.36
VPS50-217ENST00000485140 MSMPQ1L6U9 139 aa6.53□□□□□ -1.36
VPS50-217ENST00000485140 OGFOD3Q6PK18 319 aa6.53□□□□□ -1.36
VPS50-217ENST00000485140 SULF2Q8IWU5 870 aa6.53□□□□□ -1.36
VPS50-217ENST00000485140 CRIM1Q9NZV1 1036 aa6.53□□□□□ -1.36
VPS50-217ENST00000485140 ERVK-24P63145 666 aa6.52□□□□□ -1.37
VPS50-217ENST00000485140 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS50-217ENST00000485140 KCT2Q8NC54 265 aa6.52□□□□□ -1.37
VPS50-217ENST00000485140 MKNK2Q9HBH9 465 aa6.52□□□□□ -1.37
VPS50-217ENST00000485140 FAM105AQ9NUU6 356 aa6.52□□□□□ -1.37
VPS50-217ENST00000485140 PCOLCE2Q9UKZ9 415 aa6.52□□□□□ -1.37
VPS50-217ENST00000485140 IVNS1ABPQ9Y6Y0 642 aa6.52□□□□□ -1.37
VPS50-217ENST00000485140 TMPRSS2O15393 492 aa6.51□□□□□ -1.37
VPS50-217ENST00000485140 SMYD4Q8IYR2 804 aaPredicted RBP6.51□□□□□ -1.37
VPS50-217ENST00000485140 CCDC86Q9H6F5 360 aaKnown RBP6.51□□□□□ -1.37
VPS50-217ENST00000485140 FAM8A1Q9UBU6 413 aa6.51□□□□□ -1.37
VPS50-217ENST00000485140 AKAP2Q9Y2D5 859 aa6.51□□□□□ -1.37
VPS50-217ENST00000485140 DAGLAQ9Y4D2 1042 aa6.51□□□□□ -1.37
VPS50-217ENST00000485140 TRIM37O94972 964 aa6.5□□□□□ -1.37
VPS50-217ENST00000485140 MED26O95402 600 aa6.5□□□□□ -1.37
VPS50-217ENST00000485140 MAPK8P45983 427 aa6.5□□□□□ -1.37
VPS50-217ENST00000485140 FAAP100Q0VG06 881 aa6.5□□□□□ -1.37
VPS50-217ENST00000485140 KCNB2Q92953 911 aa6.5□□□□□ -1.37
VPS50-217ENST00000485140 ACSBG1Q96GR2 724 aa6.5□□□□□ -1.37
VPS50-217ENST00000485140 CYP8B1Q9UNU6 501 aa6.5□□□□□ -1.37
VPS50-217ENST00000485140 CTSBP07858 339 aa6.49□□□□□ -1.37
VPS50-217ENST00000485140 NXPE4Q6UWF7 544 aa6.49□□□□□ -1.37
VPS50-217ENST00000485140 SEZ6L2Q6UXD5 910 aa6.49□□□□□ -1.37
VPS50-217ENST00000485140 GATA6Q92908 595 aa6.49□□□□□ -1.37
VPS50-217ENST00000485140 NECAB3Q96P71 396 aaPredicted RBP6.49□□□□□ -1.37
VPS50-217ENST00000485140 FANCD2OSQ96PS1 177 aa6.49□□□□□ -1.37
VPS50-217ENST00000485140 OAS3Q9Y6K5 1087 aaKnown RBP6.49□□□□□ -1.37
VPS50-217ENST00000485140 LIG1P18858 919 aa6.48□□□□□ -1.37
VPS50-217ENST00000485140 SV2BQ7L1I2 683 aa6.48□□□□□ -1.37
VPS50-217ENST00000485140 PDZD3Q86UT5 571 aa6.48□□□□□ -1.37
VPS50-217ENST00000485140 RNF214Q8ND24 703 aa6.48□□□□□ -1.37
VPS50-217ENST00000485140 KRTAP4-7Q9BYR0 210 aa6.48□□□□□ -1.37
VPS50-217ENST00000485140 C12orf49Q9H741 205 aa6.48□□□□□ -1.37
VPS50-217ENST00000485140 CCDC39Q9UFE4 941 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms