RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 RABL6Q3YEC7 729 aaPredicted RBP15.29■□□□□ 0.04
USP40-214ENST00000483519 OTUD7BQ6GQQ9 843 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 CHST3Q7LGC8 479 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 DPF2Q92785 391 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 MRFAP1Q9Y605 127 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 PKD1L3Q7Z443 1732 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 ZSCAN26Q16670 478 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 ISM2Q6H9L7 571 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 RSRC2Q7L4I2 434 aaKnown RBP15.29■□□□□ 0.04
USP40-214ENST00000483519 FNBP4Q8N3X1 1017 aaPredicted RBP15.29■□□□□ 0.04
USP40-214ENST00000483519 JMYQ8N9B5 988 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 GOLGA1Q92805 767 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 TRIM34Q9BYJ4 488 aa15.29■□□□□ 0.04
USP40-214ENST00000483519 FAM177A1Q8N128 213 aaPredicted RBP15.28■□□□□ 0.04
USP40-214ENST00000483519 RGS22Q8NE09 1264 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 ANKRD24Q8TF21 1146 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 XAGE3Q8WTP9 111 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 EXOC4Q96A65 974 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 CCDC34Q96HJ3 373 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 BAG1Q99933 345 aaPredicted RBP15.28■□□□□ 0.04
USP40-214ENST00000483519 PSD3Q9NYI0 1048 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 MROH7-TTC4A0A0A0MT08 1334 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 CPLX1O14810 134 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 SLC39A14Q15043 492 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 TMEM139Q8IV31 216 aa15.28■□□□□ 0.04
USP40-214ENST00000483519 STX10O60499 249 aa15.27■□□□□ 0.04
USP40-214ENST00000483519 MYL6BP14649 208 aa15.27■□□□□ 0.04
USP40-214ENST00000483519 CHRNA2Q15822 529 aa15.27■□□□□ 0.04
USP40-214ENST00000483519 ZNF772Q68DY9 489 aaPredicted RBP15.27■□□□□ 0.04
USP40-214ENST00000483519 MAST3O60307 1309 aa15.27■□□□□ 0.03
USP40-214ENST00000483519 AFF2P51816 1311 aa15.27■□□□□ 0.03
USP40-214ENST00000483519 GOLGA8BA8MQT2 603 aa15.27■□□□□ 0.03
USP40-214ENST00000483519 KIF23Q02241 960 aaPredicted RBP15.27■□□□□ 0.03
USP40-214ENST00000483519 GOLGA5Q8TBA6 731 aa15.27■□□□□ 0.03
USP40-214ENST00000483519 PARD6BQ9BYG5 372 aa15.27■□□□□ 0.03
USP40-214ENST00000483519 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.27■□□□□ 0.031e-6■□□□□ 10.8
USP40-214ENST00000483519 NWD2Q9ULI1 1742 aa15.27■□□□□ 0.03
USP40-214ENST00000483519 SLIT2O94813 1529 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 CCDC151A5D8V7 595 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 TMED8Q6PL24 325 aaPredicted RBP15.26■□□□□ 0.03
USP40-214ENST00000483519 COPS6Q7L5N1 327 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 UBE3BQ7Z3V4 1068 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 FUT8Q9BYC5 575 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 RASSF4Q9H2L5 321 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 ZCCHC17Q9NP64 241 aaKnown RBP15.26■□□□□ 0.03
USP40-214ENST00000483519 HPSEQ9Y251 543 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 EVA1CP58658 441 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 BRD3Q15059 726 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 CCDC191Q8NCU4 936 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 WDR24Q96S15 920 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 EPC1Q9H2F5 836 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 BTG4Q9NY30 223 aa15.26■□□□□ 0.03
USP40-214ENST00000483519 A0A0G2JLW4 131 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 KLF18A0A0U1RQI7 1052 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 KIF28PB7ZC32 967 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 TMEM232C9JQI7 657 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 RNF113AO15541 343 aaKnown RBP15.25■□□□□ 0.03
USP40-214ENST00000483519 PPP6R2O75170 966 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 WDHD1O75717 1129 aaPredicted RBP15.25■□□□□ 0.03
USP40-214ENST00000483519 TXLNAP40222 546 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 ANKRD13DQ6ZTN6 518 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 USP21Q9UK80 565 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 AFDNP55196 1824 aaKnown RBP15.25■□□□□ 0.03
USP40-214ENST00000483519 MARCKSP29966 332 aaPredicted RBP15.25■□□□□ 0.03
USP40-214ENST00000483519 GOLGA8FQ08AF8 430 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 GOLGA8DPQ0D2H9 430 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 KIFC2Q96AC6 838 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 NEUROD6Q96NK8 337 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 FANCLQ9NW38 375 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 C5P01031 1676 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 SPEF2Q9C093 1822 aa15.25■□□□□ 0.03
USP40-214ENST00000483519 TBX2Q13207 712 aaPredicted RBP15.24■□□□□ 0.03
USP40-214ENST00000483519 PNOCQ13519 176 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 IMMTQ16891 758 aaKnown RBP15.24■□□□□ 0.03
USP40-214ENST00000483519 LONRF2Q1L5Z9 754 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 PLCH1Q4KWH8 1693 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 FAM237AA0A1B0GTK4 181 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 ZNF790Q6PG37 636 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 PDILTQ8N807 584 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 GPR108Q9NPR9 543 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 ADAM21Q9UKJ8 722 aa15.24■□□□□ 0.03
USP40-214ENST00000483519 PRC1O43663 620 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 SPECC1LQ69YQ0 1117 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 HOOK1Q9UJC3 728 aaKnown RBP15.23■□□□□ 0.03
USP40-214ENST00000483519 POTEB2H3BUK9 544 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 TNNT3P45378 269 aaPredicted RBP15.23■□□□□ 0.03
USP40-214ENST00000483519 LMAN1P49257 510 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 TTLL5Q6EMB2 1281 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 DHX58Q96C10 678 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 GPHNQ9NQX3 736 aaPredicted RBP15.23■□□□□ 0.03
USP40-214ENST00000483519 HPS5Q9UPZ3 1129 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 SCN11AQ9UI33 1791 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 RESP18Q5W5W9 173 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 CCDC102BQ68D86 513 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 SHC4Q6S5L8 630 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 TOGARAM2Q6ZUX3 1019 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 IQUBQ8NA54 791 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 CCDC12Q8WUD4 166 aaPredicted RBP15.23■□□□□ 0.03
USP40-214ENST00000483519 INTS13Q9NVM9 706 aa15.23■□□□□ 0.03
USP40-214ENST00000483519 TRPC5Q9UL62 973 aaPredicted RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms