RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 PRMT6Q96LA8 375 aaPredicted RBP14.72□□□□□ -0.05
SDC1-206ENST00000482879 HACL1Q9UJ83 578 aa14.72□□□□□ -0.05
SDC1-206ENST00000482879 POLR2AP24928 1970 aaKnown RBP14.72□□□□□ -0.05
SDC1-206ENST00000482879 WDR90Q96KV7 1748 aa14.72□□□□□ -0.05
SDC1-206ENST00000482879 ECM29Q5VYK3 1845 aa14.71□□□□□ -0.05
SDC1-206ENST00000482879 MBD4O95243 580 aa14.71□□□□□ -0.05
SDC1-206ENST00000482879 KIF4BQ2VIQ3 1234 aa14.71□□□□□ -0.05
SDC1-206ENST00000482879 CCDC129Q6ZRS4 1044 aa14.71□□□□□ -0.05
SDC1-206ENST00000482879 ARMT1Q9H993 441 aa14.71□□□□□ -0.05
SDC1-206ENST00000482879 ADARB2Q9NS39 739 aaKnown RBP14.71□□□□□ -0.05
SDC1-206ENST00000482879 USP40Q9NVE5 1235 aa14.71□□□□□ -0.05
SDC1-206ENST00000482879 CDK5RAP2Q96SN8 1893 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 IQCA1LA6NCM1 817 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 SPDYE2BA6NHP3 402 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 GPAA1O43292 621 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 EGFRP00533 1210 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 SPDYE6P0CI01 402 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 PLCG2P16885 1265 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 CDC42EP5Q6NZY7 148 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 CERS3Q8IU89 383 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 LCORLQ8N3X6 602 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 ZBED3Q96IU2 234 aaPredicted RBP14.7□□□□□ -0.06
SDC1-206ENST00000482879 STRBPQ96SI9 672 aaKnown RBP14.7□□□□□ -0.06
SDC1-206ENST00000482879 RIOK1Q9BRS2 568 aaKnown RBP14.7□□□□□ -0.06
SDC1-206ENST00000482879 ESYT1Q9BSJ8 1104 aa14.7□□□□□ -0.06
SDC1-206ENST00000482879 TDRD3Q9H7E2 651 aaKnown RBP14.7□□□□□ -0.06
SDC1-206ENST00000482879 RAD50Q92878 1312 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 POTECB2RU33 542 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 WNT10BO00744 389 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 SGSM2O43147 1006 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 MYO1BO43795 1136 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 EPHX2P34913 555 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 MFAP1P55081 439 aaKnown RBP14.69□□□□□ -0.06
SDC1-206ENST00000482879 RHBDL3P58872 404 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 NBPF9Q3BBW0 867 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 ZNF589Q86UQ0 364 aaPredicted RBP14.69□□□□□ -0.06
SDC1-206ENST00000482879 TEX11Q8IYF3 940 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 TRPM4Q8TD43 1214 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 SH3RF3Q8TEJ3 882 aaPredicted RBP14.69□□□□□ -0.06
SDC1-206ENST00000482879 ZNF526Q8TF50 670 aaPredicted RBP14.69□□□□□ -0.06
SDC1-206ENST00000482879 IL25Q9H293 177 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 RRAGCQ9HB90 399 aa14.69□□□□□ -0.06
SDC1-206ENST00000482879 CCDC171Q6TFL3 1326 aa14.68□□□□□ -0.06
SDC1-206ENST00000482879 CRNKL1Q9BZJ0 848 aaKnown RBP14.68□□□□□ -0.06
SDC1-206ENST00000482879 TAF1DQ9H5J8 278 aaPredicted RBP14.68□□□□□ -0.06
SDC1-206ENST00000482879 ZNF70Q9UC06 446 aaPredicted RBP14.68□□□□□ -0.06
SDC1-206ENST00000482879 SLC4A4Q9Y6R1 1079 aa14.68□□□□□ -0.06
SDC1-206ENST00000482879 BAZ2AQ9UIF9 1905 aaKnown RBP14.67□□□□□ -0.06
SDC1-206ENST00000482879 CLRN2A0PK11 232 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 PRKAB2O43741 272 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 VEGFAP15692 232 aaPredicted RBP14.67□□□□□ -0.06
SDC1-206ENST00000482879 GNAT2P19087 354 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 HIRAP54198 1017 aaPredicted RBP14.67□□□□□ -0.06
SDC1-206ENST00000482879 SPDYE2Q495Y8 402 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 C8orf34Q49A92 452 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 KIAA1211Q6ZU35 1233 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 USP50Q70EL3 339 aaPredicted RBP14.67□□□□□ -0.06
SDC1-206ENST00000482879 TGFBRAP1Q8WUH2 860 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 TMOD2Q9NZR1 351 aa14.67□□□□□ -0.06
SDC1-206ENST00000482879 FOCADQ5VW36 1801 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 MYH1P12882 1939 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 PATL2C9JE40 543 aaKnown RBP14.66□□□□□ -0.06
SDC1-206ENST00000482879 APPP05067 770 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 USP5P45974 858 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 CACNB3P54284 484 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 EAPPQ56P03 285 aaPredicted RBP14.66□□□□□ -0.06
SDC1-206ENST00000482879 SDR42E1Q8WUS8 393 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 VEZTQ9HBM0 779 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 NMRK2Q9NPI5 230 aa14.66□□□□□ -0.06
SDC1-206ENST00000482879 ASTN2O75129 1339 aaPredicted RBP14.66□□□□□ -0.06
SDC1-206ENST00000482879 WDHD1O75717 1129 aaPredicted RBP14.65□□□□□ -0.06
SDC1-206ENST00000482879 HSPD1P10809 573 aaKnown RBP14.65□□□□□ -0.06
SDC1-206ENST00000482879 VPS53Q5VIR6 699 aa14.65□□□□□ -0.06
SDC1-206ENST00000482879 PNMA8AQ86V59 439 aaPredicted RBP14.65□□□□□ -0.06
SDC1-206ENST00000482879 MAPKAPK5Q8IW41 473 aa14.65□□□□□ -0.06
SDC1-206ENST00000482879 RPAP1Q9BWH6 1393 aaPredicted RBP14.64□□□□□ -0.07
SDC1-206ENST00000482879 GSG1L2A8MUP6 293 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 TCP10L2B9ZVM9 353 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 EIF5BO60841 1220 aaKnown RBP14.64□□□□□ -0.07
SDC1-206ENST00000482879 REC8O95072 547 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 NFIAQ12857 509 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 PICALMQ13492 652 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 ANGEL2Q5VTE6 544 aaKnown RBP14.64□□□□□ -0.07
SDC1-206ENST00000482879 DDRGK1Q96HY6 314 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 IDI2Q9BXS1 227 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 NACAP1Q9BZK3 213 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 ANO2Q9NQ90 1003 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 ATP8A2Q9NTI2 1148 aa14.64□□□□□ -0.07
SDC1-206ENST00000482879 NAV1Q8NEY1 1877 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 PTH1RQ03431 593 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 TCP10Q12799 353 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 FKBP1CQ5VVH2 108 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 IFNL3Q8IZI9 196 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 ZC3H15Q8WU90 426 aaKnown RBP14.63□□□□□ -0.07
SDC1-206ENST00000482879 DSCC1Q9BVC3 393 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 LSG1Q9H089 658 aaKnown RBP14.63□□□□□ -0.07
SDC1-206ENST00000482879 DCP1AQ9NPI6 582 aaPredicted RBP14.63□□□□□ -0.07
SDC1-206ENST00000482879 DDX4Q9NQI0 724 aaKnown RBP14.63□□□□□ -0.07
SDC1-206ENST00000482879 GGA3Q9NZ52 723 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 FAM198AQ9UFP1 575 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms