RNA–Protein interactions for RNA: ENST00000482507.5

ATG4B-220, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4B, Length 2,414 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-220ENST00000482507 CSF1RP07333 972 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 TRAPPC3LQ5T215 181 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 NIP7Q9Y221 180 aaKnown RBP eCLIP17.31■□□□□ 0.36
ATG4B-220ENST00000482507 AKAP2Q9Y2D5 859 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 DDX60Q8IY21 1712 aaKnown RBP17.31■□□□□ 0.36
ATG4B-220ENST00000482507 A0A1W2PQ27 194 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 A0A1W2PQ64 194 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 A0A1W2PQD8 194 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 GPAA1O43292 621 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 ZFYP08048 801 aaPredicted RBP17.31■□□□□ 0.36
ATG4B-220ENST00000482507 MCAMP43121 646 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 PPP4R3BQ5MIZ7 849 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 SUSD4Q5VX71 490 aa17.31■□□□□ 0.36
ATG4B-220ENST00000482507 PCCAP05165 728 aaPredicted RBP17.3■□□□□ 0.36
ATG4B-220ENST00000482507 DPCR1Q3MIW9 517 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 FILIP1Q7Z7B0 1213 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 ZNF34Q8IZ26 560 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 TRMT112Q9UI30 125 aaKnown RBP17.3■□□□□ 0.36
ATG4B-220ENST00000482507 ZPR1O75312 459 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 RFC4P35249 363 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 CCZ1BP86790 482 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 CCZ1P86791 482 aaPredicted RBP17.3■□□□□ 0.36
ATG4B-220ENST00000482507 NCBP1Q09161 790 aaKnown RBP17.3■□□□□ 0.36
ATG4B-220ENST00000482507 TRIM28Q13263 835 aaKnown RBP17.3■□□□□ 0.36
ATG4B-220ENST00000482507 NAA30Q147X3 362 aaPredicted RBP17.3■□□□□ 0.36
ATG4B-220ENST00000482507 STK38Q15208 465 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 TPD52L1Q16890 204 aaPredicted RBP17.3■□□□□ 0.36
ATG4B-220ENST00000482507 ZNF827Q17R98 1081 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 MYSM1Q5VVJ2 828 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 NBPF11Q86T75 865 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 CEP57L1Q8IYX8 460 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 AIFM3Q96NN9 605 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 SDF4Q9BRK5 362 aa17.3■□□□□ 0.36
ATG4B-220ENST00000482507 SMTNL1A8MU46 457 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 TBC1D9BQ66K14 1250 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 NCOA7Q8NI08 942 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 PLA2G12BQ9BX93 195 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 PRDM10Q9NQV6 1147 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 POLR3EQ9NVU0 708 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 RIPOR2Q9Y4F9 1068 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 SPTLC2O15270 562 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 IFIT5Q13325 482 aaKnown RBP17.29■□□□□ 0.36
ATG4B-220ENST00000482507 TAF7LQ5H9L4 462 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 TFCP2L1Q9NZI6 479 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 KIAA1468Q9P260 1216 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 FBXO3Q9UK99 471 aa17.29■□□□□ 0.36
ATG4B-220ENST00000482507 CCDC69A6NI79 296 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 YEATS4O95619 227 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 SKILP12757 684 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 KIF23Q02241 960 aaPredicted RBP17.28■□□□□ 0.36
ATG4B-220ENST00000482507 AXDND1Q5T1B0 1012 aaPredicted RBP17.28■□□□□ 0.36
ATG4B-220ENST00000482507 TBC1D10CQ8IV04 446 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 PDCL2Q8N4E4 241 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 CCDC24Q8N4L8 307 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 ZBTB38Q8NAP3 1195 aaPredicted RBP17.28■□□□□ 0.36
ATG4B-220ENST00000482507 SENP2Q9HC62 589 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 NARFQ9UHQ1 456 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 COL5A3P25940 1745 aaPredicted RBP17.28■□□□□ 0.36
ATG4B-220ENST00000482507 ZNF213O14771 459 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 LRRFIP1Q32MZ4 808 aaKnown RBP17.28■□□□□ 0.36
ATG4B-220ENST00000482507 CYB5R4Q7L1T6 521 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 GREM2Q9H772 168 aa17.28■□□□□ 0.36
ATG4B-220ENST00000482507 LY75O60449 1722 aa17.27■□□□□ 0.36
ATG4B-220ENST00000482507 C4AP0C0L4 1744 aa17.27■□□□□ 0.36
ATG4B-220ENST00000482507 C4BP0C0L5 1744 aa17.27■□□□□ 0.36
ATG4B-220ENST00000482507 MROH7-TTC4A0A0A0MT08 1334 aa17.27■□□□□ 0.36
ATG4B-220ENST00000482507 WDHD1O75717 1129 aaPredicted RBP17.27■□□□□ 0.36
ATG4B-220ENST00000482507 SF3A1Q15459 793 aaKnown RBP17.27■□□□□ 0.36
ATG4B-220ENST00000482507 KCNG4Q8TDN1 519 aa17.27■□□□□ 0.36
ATG4B-220ENST00000482507 PIH1D3Q9NQM4 214 aaKnown RBP17.27■□□□□ 0.36
ATG4B-220ENST00000482507 BIN1O00499 593 aa17.27■□□□□ 0.35
ATG4B-220ENST00000482507 RXRAP19793 462 aa17.27■□□□□ 0.35
ATG4B-220ENST00000482507 CBX1P83916 185 aa17.27■□□□□ 0.35
ATG4B-220ENST00000482507 METTL24Q5JXM2 366 aa17.27■□□□□ 0.35
ATG4B-220ENST00000482507 RALYLQ86SE5 291 aaKnown RBP17.27■□□□□ 0.35
ATG4B-220ENST00000482507 CHMP4CQ96CF2 233 aa17.27■□□□□ 0.35
ATG4B-220ENST00000482507 AKAP11Q9UKA4 1901 aa17.27■□□□□ 0.35
ATG4B-220ENST00000482507 GOLGB1Q14789 3259 aaKnown RBP17.26■□□□□ 0.35
ATG4B-220ENST00000482507 CPLX1O14810 134 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 ITGA6P23229 1130 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 ADD2P35612 726 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 ANO1Q5XXA6 986 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 NYAP1Q6ZVC0 841 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 BRAPQ7Z569 592 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 TTLL11Q8NHH1 800 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 CAMKK2Q96RR4 588 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 DHX16O60231 1041 aaKnown RBP17.26■□□□□ 0.35
ATG4B-220ENST00000482507 ZNF202O95125 648 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 CEP135Q66GS9 1140 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 LDHAL6AQ6ZMR3 332 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 SMAP1Q8IYB5 467 aaPredicted RBP17.26■□□□□ 0.35
ATG4B-220ENST00000482507 VGLL2Q8N8G2 317 aa17.26■□□□□ 0.35
ATG4B-220ENST00000482507 ABCC12Q96J65 1359 aa17.25■□□□□ 0.35
ATG4B-220ENST00000482507 PFKFB1P16118 471 aa17.25■□□□□ 0.35
ATG4B-220ENST00000482507 U2AF2P26368 475 aaKnown RBP eCLIP17.25■□□□□ 0.358e-10■■□□□ 12.2
ATG4B-220ENST00000482507 SLC9C2Q5TAH2 1124 aa17.25■□□□□ 0.35
ATG4B-220ENST00000482507 ZNF652Q9Y2D9 606 aa17.25■□□□□ 0.35
ATG4B-220ENST00000482507 MYH7P12883 1935 aa17.25■□□□□ 0.35
ATG4B-220ENST00000482507 IRS4O14654 1257 aaPredicted RBP17.25■□□□□ 0.35
ATG4B-220ENST00000482507 NEMFO60524 1076 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms