RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 ZKSCAN4Q969J2 545 aaPredicted RBP18.92■□□□□ 0.62
LIMS3-203ENST00000480744 ERO1AQ96HE7 468 aa18.92■□□□□ 0.62
LIMS3-203ENST00000480744 MS4A4AQ96JQ5 239 aa18.92■□□□□ 0.62
LIMS3-203ENST00000480744 TNNQ9UQP3 1299 aa18.92■□□□□ 0.62
LIMS3-203ENST00000480744 SNCAIPQ9Y6H5 919 aa18.92■□□□□ 0.62
LIMS3-203ENST00000480744 TNRC18O15417 2968 aaPredicted RBP18.92■□□□□ 0.62
LIMS3-203ENST00000480744 RPAP1Q9BWH6 1393 aaPredicted RBP18.92■□□□□ 0.62
LIMS3-203ENST00000480744 SEMA3EO15041 775 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 BCAR3O75815 825 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 TRIM27P14373 513 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 TCP10Q12799 353 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 CCDC102BQ68D86 513 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 CDC42EP5Q6NZY7 148 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 MIGA2Q7L4E1 593 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 OTOP1Q7RTM1 612 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 PDE4DIPQ5VU43 2346 aa18.91■□□□□ 0.62
LIMS3-203ENST00000480744 DOCK2Q92608 1830 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 SPDYE5A6NIY4 337 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 TIMM10P62072 90 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 TFCP2Q12800 502 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 TAF1CQ15572 869 aaPredicted RBP18.9■□□□□ 0.62
LIMS3-203ENST00000480744 ERO1BQ86YB8 467 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 FAM151AQ8WW52 585 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 CLUAP1Q96AJ1 413 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 ZNF341Q9BYN7 854 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 USP40Q9NVE5 1235 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 SALL1Q9NSC2 1324 aa18.9■□□□□ 0.62
LIMS3-203ENST00000480744 SP3Q02447 781 aa18.89■□□□□ 0.61
LIMS3-203ENST00000480744 NFIAQ12857 509 aa18.89■□□□□ 0.61
LIMS3-203ENST00000480744 ATF7IPQ6VMQ6 1270 aa18.89■□□□□ 0.61
LIMS3-203ENST00000480744 ZGPATQ8N5A5 531 aaKnown RBP18.89■□□□□ 0.61
LIMS3-203ENST00000480744 A0A1B0GUL7 405 aa18.88■□□□□ 0.61
LIMS3-203ENST00000480744 RASGRF1Q13972 1273 aa18.88■□□□□ 0.61
LIMS3-203ENST00000480744 DZIP1Q86YF9 867 aaKnown RBP18.88■□□□□ 0.61
LIMS3-203ENST00000480744 FAM43AQ8N2R8 423 aa18.88■□□□□ 0.61
LIMS3-203ENST00000480744 ZFYVE28Q9HCC9 887 aa18.88■□□□□ 0.61
LIMS3-203ENST00000480744 ABCF2Q9UG63 623 aa18.88■□□□□ 0.61
LIMS3-203ENST00000480744 AKAP2Q9Y2D5 859 aa18.88■□□□□ 0.61
LIMS3-203ENST00000480744 GNAI2P04899 355 aa18.87■□□□□ 0.61
LIMS3-203ENST00000480744 CETPP11597 493 aa18.87■□□□□ 0.61
LIMS3-203ENST00000480744 INPP5BP32019 993 aa18.87■□□□□ 0.61
LIMS3-203ENST00000480744 MTX1Q13505 466 aa18.87■□□□□ 0.61
LIMS3-203ENST00000480744 XAGE2Q96GT9 111 aa18.87■□□□□ 0.61
LIMS3-203ENST00000480744 NEUROD6Q96NK8 337 aa18.87■□□□□ 0.61
LIMS3-203ENST00000480744 EFCC1Q9HA90 598 aa18.87■□□□□ 0.61
LIMS3-203ENST00000480744 IRF6O14896 467 aa18.86■□□□□ 0.61
LIMS3-203ENST00000480744 WDHD1O75717 1129 aaPredicted RBP18.86■□□□□ 0.61
LIMS3-203ENST00000480744 HNRNPUQ00839 825 aaKnown RBP eCLIP18.86■□□□□ 0.61
LIMS3-203ENST00000480744 PPIL2Q13356 520 aa18.86■□□□□ 0.61
LIMS3-203ENST00000480744 SNAPC2Q13487 334 aa18.86■□□□□ 0.61
LIMS3-203ENST00000480744 MVPQ14764 893 aaKnown RBP18.86■□□□□ 0.61
LIMS3-203ENST00000480744 MIER1Q8N108 512 aa18.86■□□□□ 0.61
LIMS3-203ENST00000480744 FAM198AQ9UFP1 575 aa18.86■□□□□ 0.61
LIMS3-203ENST00000480744 GORABQ5T7V8 394 aa18.85■□□□□ 0.61
LIMS3-203ENST00000480744 ZKSCAN2Q63HK3 967 aa18.85■□□□□ 0.61
LIMS3-203ENST00000480744 PTPN22Q9Y2R2 807 aa18.85■□□□□ 0.61
LIMS3-203ENST00000480744 ZSWIM8A7E2V4 1837 aa18.85■□□□□ 0.61
LIMS3-203ENST00000480744 PNMA6EA0A0J9YXQ4 647 aa18.84■□□□□ 0.61
LIMS3-203ENST00000480744 BTBD19C9JJ37 291 aa18.84■□□□□ 0.61
LIMS3-203ENST00000480744 RGS3P49796 1198 aa18.84■□□□□ 0.61
LIMS3-203ENST00000480744 PPATQ06203 517 aa18.84■□□□□ 0.61
LIMS3-203ENST00000480744 G3BP1Q13283 466 aaKnown RBP eCLIP18.84■□□□□ 0.61
LIMS3-203ENST00000480744 SPTY2D1Q68D10 685 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-203ENST00000480744 ZFPM1Q8IX07 1006 aa18.84■□□□□ 0.61
LIMS3-203ENST00000480744 SLF2Q8IX21 1173 aa18.84■□□□□ 0.61
LIMS3-203ENST00000480744 TMEM57Q8N5G2 664 aa18.84■□□□□ 0.61
LIMS3-203ENST00000480744 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.84■□□□□ 0.61
LIMS3-203ENST00000480744 GAKO14976 1311 aa18.83■□□□□ 0.61
LIMS3-203ENST00000480744 PDS5AQ29RF7 1337 aaKnown RBP18.83■□□□□ 0.61
LIMS3-203ENST00000480744 CAP1Q01518 475 aa18.83■□□□□ 0.6
LIMS3-203ENST00000480744 ZSCAN29Q8IWY8 852 aaPredicted RBP18.83■□□□□ 0.6
LIMS3-203ENST00000480744 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.83■□□□□ 0.6
LIMS3-203ENST00000480744 ZBTB22O15209 634 aa18.82■□□□□ 0.6
LIMS3-203ENST00000480744 BTDP43251 543 aa18.82■□□□□ 0.6
LIMS3-203ENST00000480744 ARHGEF6Q15052 776 aa18.82■□□□□ 0.6
LIMS3-203ENST00000480744 ERICH6Q7L0X2 663 aa18.82■□□□□ 0.6
LIMS3-203ENST00000480744 ZNF112Q9UJU3 913 aa18.82■□□□□ 0.6
LIMS3-203ENST00000480744 RBBP6Q7Z6E9 1792 aaKnown RBP18.81■□□□□ 0.6
LIMS3-203ENST00000480744 ENTPD3O75355 529 aa18.81■□□□□ 0.6
LIMS3-203ENST00000480744 PICALMQ13492 652 aa18.81■□□□□ 0.6
LIMS3-203ENST00000480744 PI16Q6UXB8 463 aa18.81■□□□□ 0.6
LIMS3-203ENST00000480744 IDI2Q9BXS1 227 aa18.81■□□□□ 0.6
LIMS3-203ENST00000480744 HMG20BQ9P0W2 317 aa18.81■□□□□ 0.6
LIMS3-203ENST00000480744 MROH7-TTC4A0A0A0MT08 1334 aa18.8■□□□□ 0.6
LIMS3-203ENST00000480744 DOCK1Q14185 1865 aa18.8■□□□□ 0.6
LIMS3-203ENST00000480744 TLR2O60603 784 aa18.8■□□□□ 0.6
LIMS3-203ENST00000480744 ECM2O94769 699 aaPredicted RBP18.8■□□□□ 0.6
LIMS3-203ENST00000480744 MECOMQ03112 1051 aa18.8■□□□□ 0.6
LIMS3-203ENST00000480744 OS9Q13438 667 aaPredicted RBP18.8■□□□□ 0.6
LIMS3-203ENST00000480744 SPATA5Q8NB90 893 aa18.8■□□□□ 0.6
LIMS3-203ENST00000480744 ZCCHC17Q9NP64 241 aaKnown RBP18.8■□□□□ 0.6
LIMS3-203ENST00000480744 RFX7Q2KHR2 1363 aa18.8■□□□□ 0.6
LIMS3-203ENST00000480744 KIAA0100Q14667 2235 aaKnown RBP18.8■□□□□ 0.6
LIMS3-203ENST00000480744 HTTP42858 3142 aa18.79■□□□□ 0.6
LIMS3-203ENST00000480744 KIF22Q14807 665 aa18.79■□□□□ 0.6
LIMS3-203ENST00000480744 NOL9Q5SY16 702 aaKnown RBP18.79■□□□□ 0.6
LIMS3-203ENST00000480744 TBC1D9Q6ZT07 1266 aa18.79■□□□□ 0.6
LIMS3-203ENST00000480744 FTSJ3Q8IY81 847 aaKnown RBP18.79■□□□□ 0.6
LIMS3-203ENST00000480744 C1orf115Q9H7X2 142 aa18.79■□□□□ 0.6
LIMS3-203ENST00000480744 RAI14Q9P0K7 980 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms