RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 C19orf44Q9H6X5 657 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 AKAP2Q9Y2D5 859 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 AGLP35573 1532 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 PTPN12Q05209 780 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 SART3Q15020 963 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 CCDC102BQ68D86 513 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 METTL16Q86W50 562 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 GPATCH11Q8N954 259 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 IQUBQ8NA54 791 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 PAG1Q9NWQ8 432 aa21.49■■□□□ 1.03
CCDC88B-207ENST00000479965 TIMM10P62072 90 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 LOC102724159A0A0B4J2E5 919 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 NEURL1BA8MQ27 555 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 VSNL1P62760 191 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 GCKRQ14397 625 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 CASP8Q14790 479 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 PWP2Q15269 919 aaKnown RBP21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 E2F4Q16254 413 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 RGS22Q8NE09 1264 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 DSCC1Q9BVC3 393 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 TECPR2O15040 1411 aa21.48■■□□□ 1.03
CCDC88B-207ENST00000479965 CEP112Q8N8E3 955 aa21.47■■□□□ 1.03
CCDC88B-207ENST00000479965 L1RE1Q9UN81 338 aa21.47■■□□□ 1.03
CCDC88B-207ENST00000479965 NRXN3Q9Y4C0 1643 aa21.47■■□□□ 1.03
CCDC88B-207ENST00000479965 PRC1O43663 620 aa21.47■■□□□ 1.03
CCDC88B-207ENST00000479965 FAM204AQ9H8W3 233 aa21.47■■□□□ 1.03
CCDC88B-207ENST00000479965 CDC23Q9UJX2 597 aa21.47■■□□□ 1.03
CCDC88B-207ENST00000479965 NCAPD2Q15021 1401 aa21.47■■□□□ 1.03
CCDC88B-207ENST00000479965 BMP6P22004 513 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 SAMSN1Q9NSI8 373 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 FMN2Q9NZ56 1722 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 FMR1Q06787 632 aaKnown RBP eCLIP21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 TBX2Q13207 712 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 HSP90AB3PQ58FF7 597 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 JMYQ8N9B5 988 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 WASHC4Q2M389 1173 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 COPS6Q7L5N1 327 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 VPS37DQ86XT2 251 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 XAGE3Q8WTP9 111 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 KCNH3Q9ULD8 1083 aa21.46■■□□□ 1.03
CCDC88B-207ENST00000479965 ABCC6O95255 1503 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 ATP5J2-PTCD1G3V325 749 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 PTCD1O75127 700 aaKnown RBP21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 AKAP4Q5JQC9 854 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 LRRC31Q6UY01 552 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 DEF6Q9H4E7 631 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 COPRSQ9NQ92 184 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 DDX21Q9NR30 783 aaKnown RBP eCLIP21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 SH3TC1Q8TE82 1336 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 SLC39A6Q13433 755 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 ALG1Q9BT22 464 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 RAI14Q9P0K7 980 aa21.45■■□□□ 1.02
CCDC88B-207ENST00000479965 AKR1B15C9JRZ8 316 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 HELLSQ9NRZ9 838 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 MAST3O60307 1309 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 NALCNQ8IZF0 1738 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 RNMTO43148 476 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 KLHL10Q6JEL2 608 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 RAD9BQ6WBX8 426 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 PPFIBP1Q86W92 1011 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 HNRNPLLQ8WVV9 542 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 PPM1EQ8WY54 764 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 GDAP1L1Q96MZ0 367 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 CDC5LQ99459 802 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 UTYO14607 1347 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 PLEKHO1Q53GL0 409 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 RALYLQ86SE5 291 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 GRAMD1CQ8IYS0 662 aa21.44■■□□□ 1.02
CCDC88B-207ENST00000479965 SETD1BQ9UPS6 1966 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 CTAGE9A4FU28 777 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 POTEB2H3BUK9 544 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 AKAP17AQ02040 695 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 FKBP4Q02790 459 aaKnown RBP eCLIP21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 PLPPR3Q6T4P5 718 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 SLC35F6Q8N357 371 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 AMOTL2Q9Y2J4 779 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 CTAGE15A4D2H0 777 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 CTAGE8P0CG41 777 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 CTAGE6Q86UF2 777 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 CTAGE4Q8IX94 777 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 MICALL1Q8N3F8 863 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 PHKBQ93100 1093 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 ADGRG1Q9Y653 693 aa21.43■■□□□ 1.02
CCDC88B-207ENST00000479965 TEX33O43247 280 aa21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 MKRN1Q9UHC7 482 aaKnown RBP21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 HPSEQ9Y251 543 aa21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 LRRIQ3A6PVS8 624 aaPredicted RBP21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 M0R2C6 588 aa21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 ZMYM1Q5SVZ6 1142 aa21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 HPS5Q9UPZ3 1129 aa21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 FAM71BQ8TC56 605 aa21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 TEX13AQ9BXU3 409 aaPredicted RBP21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 RABEP2Q9H5N1 569 aa21.42■■□□□ 1.02
CCDC88B-207ENST00000479965 STX17P56962 302 aa21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 HOOK1Q9UJC3 728 aaKnown RBP21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 MAN1B1Q9UKM7 699 aa21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 RAB21Q9UL25 225 aa21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.41■■□□□ 1.02
CCDC88B-207ENST00000479965 ATP2B1P20020 1258 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms