RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 CT47A1Q5JQC4 288 aaPredicted RBP15.36■□□□□ 0.05
USP42-206ENST00000479544 CCDC122Q5T0U0 273 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 ADALQ6DHV7 355 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 PRDM11Q9NQV5 511 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 SEPT11Q9NVA2 429 aaKnown RBP15.36■□□□□ 0.05
USP42-206ENST00000479544 KCNJ14Q9UNX9 436 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 GOLGA6L7A0A1B0GV03 622 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 TUBB4AP04350 444 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 UBXN1Q04323 297 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 TMEM87AQ8NBN3 555 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 ZNF142P52746 1687 aaPredicted RBP15.36■□□□□ 0.05
USP42-206ENST00000479544 FAM170AA1A519 330 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 ARID5AQ03989 594 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 ZFYVE27Q5T4F4 411 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 OTUD6BQ8N6M0 293 aa15.36■□□□□ 0.05
USP42-206ENST00000479544 E7EWF7 191 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 TAF5LO75529 589 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 AKAP2Q9Y2D5 859 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 LRRC7Q96NW7 1537 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 RNF113AO15541 343 aaKnown RBP15.35■□□□□ 0.05
USP42-206ENST00000479544 LONRF2Q1L5Z9 754 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 NAA16Q6N069 864 aaPredicted RBP15.35■□□□□ 0.05
USP42-206ENST00000479544 BRAPQ7Z569 592 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 GPR161Q8N6U8 529 aaKnown RBP15.35■□□□□ 0.05
USP42-206ENST00000479544 KRI1Q8N9T8 703 aaKnown RBP15.35■□□□□ 0.05
USP42-206ENST00000479544 TAF4BQ92750 862 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 SSH2Q76I76 1423 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 ATP2B2Q01814 1243 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 CHRNA2Q15822 529 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 C8orf37Q96NL8 207 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 PARD6BQ9BYG5 372 aa15.35■□□□□ 0.05
USP42-206ENST00000479544 EFCAB8A8MWE9 144 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 USO1O60763 962 aaKnown RBP15.34■□□□□ 0.05
USP42-206ENST00000479544 RGS22Q8NE09 1264 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 AFAP1L1Q8TED9 768 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 FAN1Q9Y2M0 1017 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 MAP3K5Q99683 1374 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 PLEKHG1Q9ULL1 1385 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 ZC3H13Q5T200 1668 aaKnown RBP15.34■□□□□ 0.05
USP42-206ENST00000479544 PRAMEF22A3QJZ6 481 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 BEND3Q5T5X7 828 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 MFSD6Q6ZSS7 791 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 TTC14Q96N46 770 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 GOPCQ9HD26 462 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 PCDHA5Q9Y5H7 936 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 CCDC196A0A1B0GTZ2 297 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 ADAMTS2O95450 1211 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 CHGBP05060 677 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 KRT9P35527 623 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 UBA7P41226 1012 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 KRT40Q6A162 431 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 RRP15Q9Y3B9 282 aaKnown RBP15.34■□□□□ 0.05
USP42-206ENST00000479544 IQGAP3Q86VI3 1631 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 NECTIN1Q15223 517 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 SPECC1LQ69YQ0 1117 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 AMOTL1Q8IY63 956 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 FAM76AQ8TAV0 307 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 ANKRD7Q92527 254 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 CWC25Q9NXE8 425 aaPredicted RBP15.34■□□□□ 0.05
USP42-206ENST00000479544 KIAA0232Q92628 1395 aa15.34■□□□□ 0.05
USP42-206ENST00000479544 TRIM66O15016 1216 aa15.33■□□□□ 0.05
USP42-206ENST00000479544 MCM3P25205 808 aa15.33■□□□□ 0.05
USP42-206ENST00000479544 IFFO1Q0D2I5 559 aa15.33■□□□□ 0.05
USP42-206ENST00000479544 RTN1Q16799 776 aa15.33■□□□□ 0.05
USP42-206ENST00000479544 NAPGQ99747 312 aaPredicted RBP15.33■□□□□ 0.05
USP42-206ENST00000479544 TAB2Q9NYJ8 693 aa15.33■□□□□ 0.05
USP42-206ENST00000479544 KIF24Q5T7B8 1368 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 VWA3AA6NCI4 1184 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 TMCO5BA8MYB1 307 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 RAD51AP2Q09MP3 1159 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 AIFM3Q96NN9 605 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 NDUFAB1O14561 156 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 WTAPQ15007 396 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 ZNF174Q15697 407 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 MORC2Q9Y6X9 1032 aaPredicted RBP15.33■□□□□ 0.04
USP42-206ENST00000479544 PTCH1Q13635 1447 aa15.33■□□□□ 0.04
USP42-206ENST00000479544 TRIM75PA6NK02 468 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 ENC1O14682 589 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 HPDP32754 393 aaPredicted RBP15.32■□□□□ 0.04
USP42-206ENST00000479544 NOP2P46087 812 aaKnown RBP15.32■□□□□ 0.04
USP42-206ENST00000479544 AKAP4Q5JQC9 854 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 GRAMD1CQ8IYS0 662 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 KBTBD3Q8NAB2 608 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 LLPHQ9BRT6 129 aaKnown RBP15.32■□□□□ 0.04
USP42-206ENST00000479544 TAF6LQ9Y6J9 622 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 CLTCL1P53675 1640 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 HSF2BPO75031 334 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 EIF4A1P60842 406 aaKnown RBP15.32■□□□□ 0.04
USP42-206ENST00000479544 PRPF4BQ13523 1007 aaKnown RBP15.32■□□□□ 0.04
USP42-206ENST00000479544 PLA2G4DQ86XP0 818 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 DIS3L2Q8IYB7 885 aaKnown RBP15.32■□□□□ 0.04
USP42-206ENST00000479544 MIGA1Q8NAN2 632 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 NSUN7Q8NE18 718 aaKnown RBP15.32■□□□□ 0.04
USP42-206ENST00000479544 MMRN2Q9H8L6 949 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 SERTAD1Q9UHV2 236 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 MYO1CO00159 1063 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 USP5P45974 858 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 SCLT1Q96NL6 688 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 GOLPH3LQ9H4A5 285 aa15.32■□□□□ 0.04
USP42-206ENST00000479544 LUC7L2Q9Y383 392 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms