RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 SEMA6BQ9H3T3 888 aa7.91□□□□□ -1.14
SF3B1-209ENST00000479532 ZNF521Q96K83 1311 aa7.91□□□□□ -1.14
SF3B1-209ENST00000479532 CNTNAP4Q9C0A0 1308 aa7.9□□□□□ -1.14
SF3B1-209ENST00000479532 FANCIQ9NVI1 1328 aa7.9□□□□□ -1.14
SF3B1-209ENST00000479532 KCNQ3O43525 872 aa7.9□□□□□ -1.14
SF3B1-209ENST00000479532 SNRPNP63162 240 aaKnown RBP7.9□□□□□ -1.14
SF3B1-209ENST00000479532 RIPOR1Q6ZS17 1223 aa7.9□□□□□ -1.14
SF3B1-209ENST00000479532 TSR2Q969E8 191 aaKnown RBP7.9□□□□□ -1.14
SF3B1-209ENST00000479532 YTHDC1Q96MU7 727 aaKnown RBP7.9□□□□□ -1.14
SF3B1-209ENST00000479532 TRERF1Q96PN7 1200 aa7.9□□□□□ -1.14
SF3B1-209ENST00000479532 RRAGCQ9HB90 399 aa7.9□□□□□ -1.14
SF3B1-209ENST00000479532 MKRN1Q9UHC7 482 aaKnown RBP7.9□□□□□ -1.14
SF3B1-209ENST00000479532 QSER1Q2KHR3 1735 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 SCO2A0A1W2PP80 73 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 TMEM88BA6NKF7 163 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 GIGYF1O75420 1035 aaPredicted RBP7.89□□□□□ -1.15
SF3B1-209ENST00000479532 CRKLP46109 303 aaKnown RBP7.89□□□□□ -1.15
SF3B1-209ENST00000479532 KCNQ4P56696 695 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 SLFN5Q08AF3 891 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 ITPK1Q13572 414 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 TWISTNBQ3B726 338 aaPredicted RBP7.89□□□□□ -1.15
SF3B1-209ENST00000479532 DUSP27Q5VZP5 1158 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 LYSMD3Q7Z3D4 306 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 DNAJC10Q8IXB1 793 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 TRIM22Q8IYM9 498 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 LINC00116Q8NCU8 138 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 FLAD1Q8NFF5 587 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 SLC10A4Q96EP9 437 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 CCDC87Q9NVE4 849 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 TFCP2L1Q9NZI6 479 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 ZMIZ1Q9ULJ6 1067 aa7.89□□□□□ -1.15
SF3B1-209ENST00000479532 RTCBQ9Y3I0 505 aaKnown RBP7.89□□□□□ -1.15
SF3B1-209ENST00000479532 A0A087WZG4 1122 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 OIP5O43482 229 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 CT47B1P0C2W7 299 aaPredicted RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 CYP19A1P11511 503 aaPredicted RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 EIF2S2P20042 333 aaKnown RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 EXOSC9Q06265 439 aaKnown RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 ELOAQ14241 798 aaKnown RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 SLC15A2Q16348 729 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 MAP7D1Q3KQU3 841 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 TSGA10IPQ3SY00 556 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 CRTC2Q53ET0 693 aaPredicted RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 CCDC30Q5VVM6 783 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 ZNF837Q96EG3 531 aaPredicted RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 SLC4A9Q96Q91 983 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 STK31Q9BXU1 1019 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 NOVA2Q9UNW9 492 aaKnown RBP7.88□□□□□ -1.15
SF3B1-209ENST00000479532 CACNA1FO60840 1977 aa7.88□□□□□ -1.15
SF3B1-209ENST00000479532 UBR3Q6ZT12 1888 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 FAM196BA6NMK8 535 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L15C9J2P7 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L10C9JJH3 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L13C9JLJ4 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L12C9JPN9 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L11C9JVI0 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L21D6R901 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L18D6R9N7 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L22D6RA61 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L17D6RBQ6 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L19D6RCP7 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L20D6RJB6 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 ATP5J2-PTCD1G3V325 749 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 ELL2O00472 640 aaPredicted RBP7.87□□□□□ -1.15
SF3B1-209ENST00000479532 LZTS3O60299 673 aaPredicted RBP7.87□□□□□ -1.15
SF3B1-209ENST00000479532 RPS6KA4O75676 772 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 BRD1O95696 1058 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 MX2P20592 715 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 CANXP27824 592 aaKnown RBP7.87□□□□□ -1.15
SF3B1-209ENST00000479532 SSFA2P28290 1259 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP17L24Q0WX57 530 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 EML3Q32P44 896 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 TRAPPC3LQ5T215 181 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 STK32AQ8WU08 396 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 ZNF428Q96B54 188 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 CCDC85AQ96PX6 553 aaPredicted RBP7.87□□□□□ -1.15
SF3B1-209ENST00000479532 DOLKQ9UPQ8 538 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 USP16Q9Y5T5 823 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 TUBGCP6Q96RT7 1819 aa7.87□□□□□ -1.15
SF3B1-209ENST00000479532 PRAMEF22A3QJZ6 481 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 EIF5BO60841 1220 aaKnown RBP7.86□□□□□ -1.15
SF3B1-209ENST00000479532 A1BGP04217 495 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 RASA1P20936 1047 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 RFC4P35249 363 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 IL6STP40189 918 aaPredicted RBP7.86□□□□□ -1.15
SF3B1-209ENST00000479532 GRIN2CQ14957 1233 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 NBPF20Q3BBV1 942 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 TMEM164Q5U3C3 297 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 PRICKLE2Q7Z3G6 844 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 C8orf58Q8NAV2 365 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 GTPBP3Q969Y2 492 aaKnown RBP7.86□□□□□ -1.15
SF3B1-209ENST00000479532 KCTD15Q96SI1 283 aaPredicted RBP7.86□□□□□ -1.15
SF3B1-209ENST00000479532 KRTAP9-9Q9BYP9 154 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 KRTAP9-4Q9BYQ2 154 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 DBF4Q9UBU7 674 aaPredicted RBP7.86□□□□□ -1.15
SF3B1-209ENST00000479532 ZBTB1Q9Y2K1 713 aa7.86□□□□□ -1.15
SF3B1-209ENST00000479532 MYH14Q7Z406 1995 aaKnown RBP7.86□□□□□ -1.15
SF3B1-209ENST00000479532 COL15A1P39059 1388 aa7.85□□□□□ -1.15
SF3B1-209ENST00000479532 C1QTNF9BB2RNN3 333 aa7.85□□□□□ -1.15
SF3B1-209ENST00000479532 H7C1W4 665 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms