RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 LY9Q9HBG7 655 aa11.51□□□□□ -0.57
USP39-214ENST00000474572 B4E1Z4 1266 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 APPP05067 770 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 CYP7A1P22680 504 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 RFC4P35249 363 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 RCAN1P53805 252 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 UVSSAQ2YD98 709 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 SLC27A3Q5K4L6 730 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 APOA5Q6Q788 366 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 RBM43Q6ZSC3 357 aaKnown RBP11.5□□□□□ -0.57
USP39-214ENST00000474572 ADGRA1Q86SQ6 560 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 ZNF384Q8TF68 577 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 PGBD1Q96JS3 809 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 SPATA32Q96LK8 384 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 NACAP1Q9BZK3 213 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 LRP2BPQ9P2M1 347 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 RCOR1Q9UKL0 485 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 CFAP45Q9UL16 551 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 SLC4A4Q9Y6R1 1079 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 STK36Q9NRP7 1315 aa11.5□□□□□ -0.57
USP39-214ENST00000474572 BAZ2AQ9UIF9 1905 aaKnown RBP11.5□□□□□ -0.57
USP39-214ENST00000474572 RGPD3A6NKT7 1758 aaPredicted RBP11.49□□□□□ -0.57
USP39-214ENST00000474572 RGPD4Q7Z3J3 1758 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 ANKRD31Q8N7Z5 1873 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 MAGEB6P1A0A0J9YX57 407 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 WTIPA6NIX2 430 aaPredicted RBP11.49□□□□□ -0.57
USP39-214ENST00000474572 PRKAB2O43741 272 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 FGRP09769 529 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 GRAPQ13588 217 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 NTRK3Q16288 839 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 GIMAP6Q6P9H5 292 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 ILDR1Q86SU0 546 aaPredicted RBP11.49□□□□□ -0.57
USP39-214ENST00000474572 GRAPLQ8TC17 118 aaPredicted RBP11.49□□□□□ -0.57
USP39-214ENST00000474572 BRIP1Q9BX63 1249 aa11.49□□□□□ -0.57
USP39-214ENST00000474572 DDX19AQ9NUU7 478 aaKnown RBP11.49□□□□□ -0.57
USP39-214ENST00000474572 DDX60LQ5H9U9 1706 aaKnown RBP11.49□□□□□ -0.57
USP39-214ENST00000474572 PCP11498 1178 aaKnown RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 GYS1P13807 737 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 LIG1P18858 919 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 KLRK1P26718 216 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 HIBADHP31937 336 aaKnown RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 TDO2P48775 406 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 METAP2P50579 478 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP39-214ENST00000474572 CTDSPL2Q05D32 466 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 CRY2Q49AN0 593 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 PRR5LQ6MZQ0 368 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 FBXO18Q8NFZ0 1043 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 ANP32BQ92688 251 aaKnown RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 NSUN4Q96CB9 384 aaKnown RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 ZNF396Q96N95 335 aaPredicted RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 RNF41Q9H4P4 317 aaPredicted RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 FAM217BQ9NTX9 383 aaPredicted RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 RAI14Q9P0K7 980 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 ZSWIM5Q9P217 1185 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 TFIP11Q9UBB9 837 aaKnown RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 ORC3Q9UBD5 711 aaPredicted RBP11.48□□□□□ -0.57
USP39-214ENST00000474572 LEMD3Q9Y2U8 911 aa11.48□□□□□ -0.57
USP39-214ENST00000474572 NAV1Q8NEY1 1877 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 CDK5RAP2Q96SN8 1893 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.47□□□□□ -0.57
USP39-214ENST00000474572 ZBTB43O43298 467 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 CDKL5O76039 1030 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 HMGB2P26583 209 aaKnown RBP11.47□□□□□ -0.57
USP39-214ENST00000474572 PPARAQ07869 468 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 HS1BP3Q53T59 392 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 TMEM67Q5HYA8 995 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 MFSD6Q6ZSS7 791 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 BRAPQ7Z569 592 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 CNBD1Q8NA66 436 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 MIGA1Q8NAN2 632 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 C8orf76Q96K31 380 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 USP28Q96RU2 1077 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 NUP62CLQ9H1M0 184 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 QTRT2Q9H974 415 aaKnown RBP11.47□□□□□ -0.57
USP39-214ENST00000474572 SENP2Q9HC62 589 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 RRAGDQ9NQL2 400 aaPredicted RBP11.47□□□□□ -0.57
USP39-214ENST00000474572 RTEL1Q9NZ71 1219 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 ABCF2Q9UG63 623 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 NAP1L2Q9ULW6 460 aaPredicted RBP11.47□□□□□ -0.57
USP39-214ENST00000474572 IQSEC3Q9UPP2 1182 aaPredicted RBP11.47□□□□□ -0.57
USP39-214ENST00000474572 MYH2Q9UKX2 1941 aa11.47□□□□□ -0.57
USP39-214ENST00000474572 CPLX1O14810 134 aa11.46□□□□□ -0.57
USP39-214ENST00000474572 KDM4AO75164 1064 aa11.46□□□□□ -0.57
USP39-214ENST00000474572 CDC27P30260 824 aa11.46□□□□□ -0.57
USP39-214ENST00000474572 CPLX2Q6PUV4 134 aaKnown RBP11.46□□□□□ -0.57
USP39-214ENST00000474572 VPS37DQ86XT2 251 aa11.46□□□□□ -0.57
USP39-214ENST00000474572 CLSTN2Q9H4D0 955 aa11.46□□□□□ -0.57
USP39-214ENST00000474572 QSER1Q2KHR3 1735 aa11.46□□□□□ -0.58
USP39-214ENST00000474572 TNS1Q9HBL0 1735 aaKnown RBP11.46□□□□□ -0.58
USP39-214ENST00000474572 MYH6P13533 1939 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 XDHP47989 1333 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 FOCADQ5VW36 1801 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 KLRG2A4D1S0 409 aaPredicted RBP11.45□□□□□ -0.58
USP39-214ENST00000474572 GOLGA8AA7E2F4 631 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 IFIT3O14879 490 aaKnown RBP11.45□□□□□ -0.58
USP39-214ENST00000474572 YEATS4O95619 227 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 IFNAR1P17181 557 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 NT5C2P49902 561 aa11.45□□□□□ -0.58
USP39-214ENST00000474572 DYNLL1P63167 89 aaKnown RBP11.45□□□□□ -0.58
USP39-214ENST00000474572 KIF23Q02241 960 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms