RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 GAKO14976 1311 aa14.72□□□□□ -0.05
SYNE1-221ENST00000472563 INHBEP58166 350 aa14.72□□□□□ -0.05
SYNE1-221ENST00000472563 MKRN3Q13064 507 aaKnown RBP14.72□□□□□ -0.05
SYNE1-221ENST00000472563 DZIP1Q86YF9 867 aaKnown RBP14.72□□□□□ -0.05
SYNE1-221ENST00000472563 FAM151AQ8WW52 585 aa14.72□□□□□ -0.05
SYNE1-221ENST00000472563 WNK4Q96J92 1243 aa14.72□□□□□ -0.05
SYNE1-221ENST00000472563 CHMP4BQ9H444 224 aaKnown RBP14.72□□□□□ -0.05
SYNE1-221ENST00000472563 ZBTB40Q9NUA8 1239 aa14.72□□□□□ -0.05
SYNE1-221ENST00000472563 USP40Q9NVE5 1235 aa14.72□□□□□ -0.05
SYNE1-221ENST00000472563 COG6Q9Y2V7 657 aa14.72□□□□□ -0.05
SYNE1-221ENST00000472563 MANSC4A6NHS7 340 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-221ENST00000472563 MAP3K9P80192 1104 aa14.71□□□□□ -0.05
SYNE1-221ENST00000472563 PDE3AQ14432 1141 aa14.71□□□□□ -0.05
SYNE1-221ENST00000472563 CCDC158Q5M9N0 1113 aa14.71□□□□□ -0.05
SYNE1-221ENST00000472563 PI16Q6UXB8 463 aa14.71□□□□□ -0.05
SYNE1-221ENST00000472563 ERICH6Q7L0X2 663 aa14.71□□□□□ -0.05
SYNE1-221ENST00000472563 RPAP2Q8IXW5 612 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-221ENST00000472563 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.71□□□□□ -0.05
SYNE1-221ENST00000472563 ZNF512BQ96KM6 892 aaPredicted RBP14.71□□□□□ -0.05
SYNE1-221ENST00000472563 DBNDD2Q9BQY9 259 aa14.71□□□□□ -0.05
SYNE1-221ENST00000472563 RPAP1Q9BWH6 1393 aaPredicted RBP14.71□□□□□ -0.06
SYNE1-221ENST00000472563 MCAMP43121 646 aa14.7□□□□□ -0.06
SYNE1-221ENST00000472563 MECOMQ03112 1051 aa14.7□□□□□ -0.06
SYNE1-221ENST00000472563 NFIAQ12857 509 aa14.7□□□□□ -0.06
SYNE1-221ENST00000472563 DCAF15Q66K64 600 aa14.7□□□□□ -0.06
SYNE1-221ENST00000472563 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-221ENST00000472563 ERC1Q8IUD2 1116 aa14.7□□□□□ -0.06
SYNE1-221ENST00000472563 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.7□□□□□ -0.06
SYNE1-221ENST00000472563 IDI2Q9BXS1 227 aa14.7□□□□□ -0.06
SYNE1-221ENST00000472563 ALDH1A1P00352 501 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 GSTO1P78417 241 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 HSP90AB4PQ58FF6 505 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 TTC39AQ5SRH9 613 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 TBC1D9Q6ZT07 1266 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 NSUN4Q96CB9 384 aaKnown RBP14.69□□□□□ -0.06
SYNE1-221ENST00000472563 EAF2Q96CJ1 260 aaPredicted RBP14.69□□□□□ -0.06
SYNE1-221ENST00000472563 CFHR5Q9BXR6 569 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 FAM198AQ9UFP1 575 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 CSADQ9Y600 493 aa14.69□□□□□ -0.06
SYNE1-221ENST00000472563 MROH7-TTC4A0A0A0MT08 1334 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 GPR75-ASB3A0A0A6YYF3 556 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 IGSF3O75054 1194 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 HMMRO75330 724 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 ENTPD3O75355 529 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 LDHCP07864 332 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 GJA5P36382 358 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 BTDP43251 543 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 TCP10Q12799 353 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 VGLL4Q14135 290 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 NOM1Q5C9Z4 860 aaKnown RBP14.68□□□□□ -0.06
SYNE1-221ENST00000472563 ZNF384Q8TF68 577 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 ELP3Q9H9T3 547 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-221ENST00000472563 DBNLQ9UJU6 430 aaKnown RBP14.68□□□□□ -0.06
SYNE1-221ENST00000472563 EXOC6BQ9Y2D4 811 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 ARAP2Q8WZ64 1704 aa14.68□□□□□ -0.06
SYNE1-221ENST00000472563 TESPA1A2RU30 521 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-221ENST00000472563 MAP4K4O95819 1239 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-221ENST00000472563 RGS3P49796 1198 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 IFNL1Q8IU54 200 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 SIRT2Q8IXJ6 389 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 OPTNQ96CV9 577 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 ZNF341Q9BYN7 854 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 CCDC8Q9H0W5 538 aaPredicted RBP14.67□□□□□ -0.06
SYNE1-221ENST00000472563 SNRKQ9NRH2 765 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 RAI14Q9P0K7 980 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 LRP2BPQ9P2M1 347 aa14.67□□□□□ -0.06
SYNE1-221ENST00000472563 SPDYE5A6NIY4 337 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 NPM3O75607 178 aaKnown RBP14.66□□□□□ -0.06
SYNE1-221ENST00000472563 WDHD1O75717 1129 aaPredicted RBP14.66□□□□□ -0.06
SYNE1-221ENST00000472563 CAPN15O75808 1086 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 TBC1D8O95759 1140 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 RHBDL3P58872 404 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 C20orf194Q5TEA3 1177 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 MIGA2Q7L4E1 593 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 ZFPM1Q8IX07 1006 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 ABHD8Q96I13 439 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 WRNIP1Q96S55 665 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 TLR7Q9NYK1 1049 aaKnown RBP14.66□□□□□ -0.06
SYNE1-221ENST00000472563 ZNF112Q9UJU3 913 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 SNCAIPQ9Y6H5 919 aa14.66□□□□□ -0.06
SYNE1-221ENST00000472563 RFX7Q2KHR2 1363 aa14.65□□□□□ -0.06
SYNE1-221ENST00000472563 IGF2BP3O00425 579 aaKnown RBP eCLIP14.65□□□□□ -0.06
SYNE1-221ENST00000472563 CYP2E1P05181 493 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-221ENST00000472563 OTUD7BQ6GQQ9 843 aa14.65□□□□□ -0.06
SYNE1-221ENST00000472563 RHPN1Q8TCX5 695 aa14.65□□□□□ -0.06
SYNE1-221ENST00000472563 ZKSCAN4Q969J2 545 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-221ENST00000472563 MS4A4AQ96JQ5 239 aa14.65□□□□□ -0.06
SYNE1-221ENST00000472563 GPR25O00155 361 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 ZAP70P43403 619 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 GTF2A2P52657 109 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 DGKZQ13574 1117 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 AACSQ86V21 672 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 ERO1BQ86YB8 467 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 CNKSR2Q8WXI2 1034 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 MCOLN1Q9GZU1 580 aa14.64□□□□□ -0.07
SYNE1-221ENST00000472563 DDX4Q9NQI0 724 aaKnown RBP14.64□□□□□ -0.07
SYNE1-221ENST00000472563 ATRNL1Q5VV63 1379 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 RAB11FIP3O75154 756 aa14.63□□□□□ -0.07
SYNE1-221ENST00000472563 MAP3K10Q02779 954 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms