RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DENND2AQ9ULE3 1009 aa19.47■□□□□ 0.71
CCDC88B-205ENST00000472524 A0A1B0GUL7 405 aa19.46■□□□□ 0.71
CCDC88B-205ENST00000472524 TESPA1A2RU30 521 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-205ENST00000472524 LDHBP07195 334 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-205ENST00000472524 DIXDC1Q155Q3 683 aa19.46■□□□□ 0.71
CCDC88B-205ENST00000472524 PRPF38BQ5VTL8 546 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-205ENST00000472524 MS4A4AQ96JQ5 239 aa19.46■□□□□ 0.71
CCDC88B-205ENST00000472524 SEMA3EO15041 775 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 CAP1Q01518 475 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 VGLL4Q14135 290 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 OTUD7BQ6GQQ9 843 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 CD99L2Q8TCZ2 262 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 XAGE2Q96GT9 111 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 C1orf115Q9H7X2 142 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 AKAP2Q9Y2D5 859 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 DAGLAQ9Y4D2 1042 aa19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-205ENST00000472524 RASGRF1Q13972 1273 aa19.44■□□□□ 0.7
CCDC88B-205ENST00000472524 ITPRIPQ8IWB1 547 aa19.44■□□□□ 0.7
CCDC88B-205ENST00000472524 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.44■□□□□ 0.7
CCDC88B-205ENST00000472524 NEUROD6Q96NK8 337 aa19.44■□□□□ 0.7
CCDC88B-205ENST00000472524 SALL1Q9NSC2 1324 aa19.44■□□□□ 0.7
CCDC88B-205ENST00000472524 RLBP1P12271 317 aa19.43■□□□□ 0.7
CCDC88B-205ENST00000472524 G3BP1Q13283 466 aaKnown RBP eCLIP19.43■□□□□ 0.7
CCDC88B-205ENST00000472524 FAM83AQ86UY5 434 aa19.43■□□□□ 0.7
CCDC88B-205ENST00000472524 BRI3BPQ8WY22 251 aa19.43■□□□□ 0.7
CCDC88B-205ENST00000472524 ERO1AQ96HE7 468 aa19.43■□□□□ 0.7
CCDC88B-205ENST00000472524 DOCK2Q92608 1830 aa19.43■□□□□ 0.7
CCDC88B-205ENST00000472524 POTEFA5A3E0 1075 aa19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 MAP3K9P80192 1104 aa19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 MVPQ14764 893 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 FKBP1CQ5VVH2 108 aa19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 ZGPATQ8N5A5 531 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 OTUD5Q96G74 571 aa19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 ABCF2Q9UG63 623 aa19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 PTPN22Q9Y2R2 807 aa19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 PDE4DIPQ5VU43 2346 aa19.42■□□□□ 0.7
CCDC88B-205ENST00000472524 SP3Q02447 781 aa19.41■□□□□ 0.7
CCDC88B-205ENST00000472524 TCP10Q12799 353 aa19.41■□□□□ 0.7
CCDC88B-205ENST00000472524 GORABQ5T7V8 394 aa19.41■□□□□ 0.7
CCDC88B-205ENST00000472524 CDC42EP5Q6NZY7 148 aa19.41■□□□□ 0.7
CCDC88B-205ENST00000472524 EFCC1Q9HA90 598 aa19.41■□□□□ 0.7
CCDC88B-205ENST00000472524 CSADQ9Y600 493 aa19.41■□□□□ 0.7
CCDC88B-205ENST00000472524 RPAP1Q9BWH6 1393 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-205ENST00000472524 MYO5AQ9Y4I1 1855 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-205ENST00000472524 CCL15-CCL14A0A0B4J2E2 113 aa19.4■□□□□ 0.7
CCDC88B-205ENST00000472524 OS9Q13438 667 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-205ENST00000472524 CCL15Q16663 113 aa19.4■□□□□ 0.7
CCDC88B-205ENST00000472524 DZIP1Q86YF9 867 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-205ENST00000472524 FAM43AQ8N2R8 423 aa19.4■□□□□ 0.7
CCDC88B-205ENST00000472524 CENPFP49454 3210 aa19.39■□□□□ 0.69
CCDC88B-205ENST00000472524 ZBTB22O15209 634 aa19.39■□□□□ 0.69
CCDC88B-205ENST00000472524 GTF2A2P52657 109 aa19.39■□□□□ 0.69
CCDC88B-205ENST00000472524 HOOK2Q96ED9 719 aa19.39■□□□□ 0.69
CCDC88B-205ENST00000472524 WRNIP1Q96S55 665 aa19.39■□□□□ 0.69
CCDC88B-205ENST00000472524 USP40Q9NVE5 1235 aa19.39■□□□□ 0.69
CCDC88B-205ENST00000472524 SNCAIPQ9Y6H5 919 aa19.39■□□□□ 0.69
CCDC88B-205ENST00000472524 SPDYE5A6NIY4 337 aa19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 MKI67P46013 3256 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 ATP8B2P98198 1209 aa19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 NFIAQ12857 509 aa19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 POLA2Q14181 598 aa19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 PDS5AQ29RF7 1337 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 DCAF15Q66K64 600 aa19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 FAM151AQ8WW52 585 aa19.38■□□□□ 0.69
CCDC88B-205ENST00000472524 ZBTB7BO15156 539 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 TAF1CQ15572 869 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 SPTY2D1Q68D10 685 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 PI16Q6UXB8 463 aa19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 MIGA2Q7L4E1 593 aa19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 PANK1Q8TE04 598 aa19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 SSH3Q8TE77 659 aa19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 ZKSCAN4Q969J2 545 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 ARMC5Q96C12 935 aa19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 HMG20BQ9P0W2 317 aa19.37■□□□□ 0.69
CCDC88B-205ENST00000472524 GAKO14976 1311 aa19.36■□□□□ 0.69
CCDC88B-205ENST00000472524 SURF6O75683 361 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-205ENST00000472524 ERICH6Q7L0X2 663 aa19.36■□□□□ 0.69
CCDC88B-205ENST00000472524 ZNF341Q9BYN7 854 aa19.36■□□□□ 0.69
CCDC88B-205ENST00000472524 ZFYVE28Q9HCC9 887 aa19.36■□□□□ 0.69
CCDC88B-205ENST00000472524 FAM198AQ9UFP1 575 aa19.36■□□□□ 0.69
CCDC88B-205ENST00000472524 BRCA2P51587 3418 aa19.35■□□□□ 0.69
CCDC88B-205ENST00000472524 MAST2Q6P0Q8 1798 aa19.35■□□□□ 0.69
CCDC88B-205ENST00000472524 ARID4AP29374 1257 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-205ENST00000472524 ERO1BQ86YB8 467 aa19.35■□□□□ 0.69
CCDC88B-205ENST00000472524 SLF2Q8IX21 1173 aa19.35■□□□□ 0.69
CCDC88B-205ENST00000472524 SPATA5Q8NB90 893 aa19.35■□□□□ 0.69
CCDC88B-205ENST00000472524 MROH7-TTC4A0A0A0MT08 1334 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 IRF6O14896 467 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 MCAMP43121 646 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 BTDP43251 543 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 MECOMQ03112 1051 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 TNNI3KQ59H18 835 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 TBC1D9Q6ZT07 1266 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 ZFPM1Q8IX07 1006 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 FPGT-TNNI3KV9GXZ4 949 aa19.34■□□□□ 0.69
CCDC88B-205ENST00000472524 BTBD19C9JJ37 291 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 UQCRFS1P1P0C7P4 283 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 CETPP11597 493 aa19.33■□□□□ 0.68
CCDC88B-205ENST00000472524 EN2P19622 333 aaPredicted RBP19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms