RNA–Protein interactions for RNA: ENST00000470994.1

GPNMB-208, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 538 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-208ENST00000470994 RGL4Q8IZJ4 473 aa8.59□□□□□ -1.03
GPNMB-208ENST00000470994 AGGF1Q8N302 714 aaeCLIP8.59□□□□□ -1.03
GPNMB-208ENST00000470994 GLMNQ92990 594 aa8.59□□□□□ -1.03
GPNMB-208ENST00000470994 RNF114Q9Y508 228 aa8.59□□□□□ -1.03
GPNMB-208ENST00000470994 PPME1Q9Y570 386 aa8.59□□□□□ -1.03
GPNMB-208ENST00000470994 OAS3Q9Y6K5 1087 aaKnown RBP8.59□□□□□ -1.03
GPNMB-208ENST00000470994 TRPM2O94759 1503 aa8.59□□□□□ -1.03
GPNMB-208ENST00000470994 RPGRIP1LQ68CZ1 1315 aa8.58□□□□□ -1.04
GPNMB-208ENST00000470994 UNC13BO14795 1591 aa8.58□□□□□ -1.04
GPNMB-208ENST00000470994 MMP20O60882 483 aa8.58□□□□□ -1.04
GPNMB-208ENST00000470994 LGR5O75473 907 aa8.58□□□□□ -1.04
GPNMB-208ENST00000470994 TGFB1P01137 390 aa8.58□□□□□ -1.04
GPNMB-208ENST00000470994 XIRP1Q702N8 1843 aaKnown RBP8.58□□□□□ -1.04
GPNMB-208ENST00000470994 LRP6O75581 1613 aa8.58□□□□□ -1.04
GPNMB-208ENST00000470994 RBM6P78332 1123 aaKnown RBP8.57□□□□□ -1.04
GPNMB-208ENST00000470994 XPCQ01831 940 aaPredicted RBP8.57□□□□□ -1.04
GPNMB-208ENST00000470994 TREML1Q86YW5 311 aa8.57□□□□□ -1.04
GPNMB-208ENST00000470994 UTP4Q969X6 686 aaKnown RBP8.57□□□□□ -1.04
GPNMB-208ENST00000470994 E9PCH4 1651 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 GCC2Q8IWJ2 1684 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 MST1RQ04912 1400 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 NAIPQ13075 1403 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 OPLAHO14841 1288 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 WEE1P30291 646 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 NFIAQ12857 509 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 TMEM132EQ6IEE7 984 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 WAPLQ7Z5K2 1190 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 PHLPP1O60346 1717 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 ROBO2Q9HCK4 1378 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 DIP2AQ14689 1571 aa8.56□□□□□ -1.04
GPNMB-208ENST00000470994 DCCP43146 1447 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 ADGRL3Q9HAR2 1447 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 IQGAP3Q86VI3 1631 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 ACAD11Q709F0 780 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 MPHOSPH9Q99550 1183 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 TRIM33Q9UPN9 1127 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 USP20Q9Y2K6 914 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 PNPLA6Q8IY17 1366 aa8.55□□□□□ -1.04
GPNMB-208ENST00000470994 ADGRF5Q8IZF2 1346 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 SETD5Q9C0A6 1442 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 RRBP1Q9P2E9 1410 aaKnown RBP8.54□□□□□ -1.04
GPNMB-208ENST00000470994 C1orf167Q5SNV9 1468 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 MED26O95402 600 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 CD68P34810 354 aaPredicted RBP8.54□□□□□ -1.04
GPNMB-208ENST00000470994 FAM117BQ6P1L5 589 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 NLRP13Q86W25 1043 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 ZDHHC13Q8IUH4 622 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 SPACA7Q96KW9 195 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 UBL7Q96S82 380 aaPredicted RBP8.54□□□□□ -1.04
GPNMB-208ENST00000470994 DBNDD2Q9BQY9 259 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 VRTNQ9H8Y1 702 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 CHD2O14647 1828 aaKnown RBP8.54□□□□□ -1.04
GPNMB-208ENST00000470994 ASXL1Q8IXJ9 1541 aa8.54□□□□□ -1.04
GPNMB-208ENST00000470994 FAM177BA6PVY3 158 aa8.53□□□□□ -1.04
GPNMB-208ENST00000470994 SPINK2P20155 84 aa8.53□□□□□ -1.04
GPNMB-208ENST00000470994 RNF43Q68DV7 783 aa8.53□□□□□ -1.04
GPNMB-208ENST00000470994 TRPC5Q9UL62 973 aaPredicted RBP8.53□□□□□ -1.04
GPNMB-208ENST00000470994 COL16A1Q07092 1604 aaPredicted RBP8.53□□□□□ -1.04
GPNMB-208ENST00000470994 MYO5BQ9ULV0 1848 aa8.52□□□□□ -1.04
GPNMB-208ENST00000470994 SIPA1L2Q9P2F8 1722 aaPredicted RBP8.52□□□□□ -1.05
GPNMB-208ENST00000470994 AHDC1Q5TGY3 1603 aaPredicted RBP8.52□□□□□ -1.05
GPNMB-208ENST00000470994 SMNDC1O75940 238 aaKnown RBP eCLIP8.52□□□□□ -1.05
GPNMB-208ENST00000470994 SAFB2Q14151 953 aaKnown RBP eCLIP8.52□□□□□ -1.05
GPNMB-208ENST00000470994 PPP1R12CQ9BZL4 782 aa8.52□□□□□ -1.05
GPNMB-208ENST00000470994 C7orf69Q9H7B7 122 aa8.52□□□□□ -1.05
GPNMB-208ENST00000470994 FAM13BQ9NYF5 915 aa8.52□□□□□ -1.05
GPNMB-208ENST00000470994 KCNMB2Q9Y691 235 aa8.52□□□□□ -1.05
GPNMB-208ENST00000470994 SETBP1Q9Y6X0 1596 aa8.52□□□□□ -1.05
GPNMB-208ENST00000470994 NPHP3Q7Z494 1330 aa8.52□□□□□ -1.05
GPNMB-208ENST00000470994 LINC01387J3KSC0 135 aa8.51□□□□□ -1.05
GPNMB-208ENST00000470994 WNT11O96014 354 aa8.51□□□□□ -1.05
GPNMB-208ENST00000470994 HYAL2Q12891 473 aa8.51□□□□□ -1.05
GPNMB-208ENST00000470994 ARMC10Q8N2F6 343 aa8.51□□□□□ -1.05
GPNMB-208ENST00000470994 KLHL23Q8NBE8 558 aa8.51□□□□□ -1.05
GPNMB-208ENST00000470994 HFM1A2PYH4 1435 aa8.51□□□□□ -1.05
GPNMB-208ENST00000470994 CCDC144AA2RUR9 1427 aa8.51□□□□□ -1.05
GPNMB-208ENST00000470994 CDC27P30260 824 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 KRT28Q7Z3Y7 464 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 DTX1Q86Y01 620 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 TRIM42Q8IWZ5 723 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 GALNT11Q8NCW6 608 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 FAM46AQ96IP4 442 aaKnown RBP8.5□□□□□ -1.05
GPNMB-208ENST00000470994 CALR3Q96L12 384 aaKnown RBP8.5□□□□□ -1.05
GPNMB-208ENST00000470994 MYRFLQ96LU7 910 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 POGKQ9P215 609 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 LRFN2Q9ULH4 789 aa8.5□□□□□ -1.05
GPNMB-208ENST00000470994 NEXMIFQ5QGS0 1516 aa8.49□□□□□ -1.05
GPNMB-208ENST00000470994 PTCH1Q13635 1447 aa8.49□□□□□ -1.05
GPNMB-208ENST00000470994 SART1O43290 800 aaKnown RBP8.49□□□□□ -1.05
GPNMB-208ENST00000470994 DUOXA2Q1HG44 320 aa8.49□□□□□ -1.05
GPNMB-208ENST00000470994 CFAP70Q5T0N1 1121 aa8.49□□□□□ -1.05
GPNMB-208ENST00000470994 FNBP4Q8N3X1 1017 aaPredicted RBP8.49□□□□□ -1.05
GPNMB-208ENST00000470994 OR13H1Q8NG92 308 aa8.49□□□□□ -1.05
GPNMB-208ENST00000470994 FAM200AQ8TCP9 573 aa8.49□□□□□ -1.05
GPNMB-208ENST00000470994 LRPPRCP42704 1394 aaKnown RBP8.48□□□□□ -1.05
GPNMB-208ENST00000470994 ANKRD30BQ9BXX2 1392 aa8.48□□□□□ -1.05
GPNMB-208ENST00000470994 PLEKHH1Q9ULM0 1364 aa8.48□□□□□ -1.05
GPNMB-208ENST00000470994 CLTCL1P53675 1640 aa8.48□□□□□ -1.05
GPNMB-208ENST00000470994 WISP1O95388 367 aa8.48□□□□□ -1.05
GPNMB-208ENST00000470994 CEP135Q66GS9 1140 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms