RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 TDRD3Q9H7E2 651 aaKnown RBP17.9■□□□□ 0.46
COL9A3-209ENST00000469852 CDK5RAP2Q96SN8 1893 aa17.89■□□□□ 0.45
COL9A3-209ENST00000469852 CLRN2A0PK11 232 aa17.89■□□□□ 0.45
COL9A3-209ENST00000469852 MMP14P50281 582 aa17.89■□□□□ 0.45
COL9A3-209ENST00000469852 DYNLL1P63167 89 aaKnown RBP17.89■□□□□ 0.45
COL9A3-209ENST00000469852 GSTO1P78417 241 aa17.89■□□□□ 0.45
COL9A3-209ENST00000469852 KLRG1Q96E93 195 aa17.89■□□□□ 0.45
COL9A3-209ENST00000469852 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.89■□□□□ 0.45
COL9A3-209ENST00000469852 SCAF8Q9UPN6 1271 aaKnown RBP17.89■□□□□ 0.45
COL9A3-209ENST00000469852 POLR2AP24928 1970 aaKnown RBP17.89■□□□□ 0.45
COL9A3-209ENST00000469852 GPR75-ASB3A0A0A6YYF3 556 aa17.88■□□□□ 0.45
COL9A3-209ENST00000469852 RNF113AO15541 343 aaKnown RBP17.88■□□□□ 0.45
COL9A3-209ENST00000469852 CACNB3P54284 484 aa17.88■□□□□ 0.45
COL9A3-209ENST00000469852 CDC42EP5Q6NZY7 148 aa17.88■□□□□ 0.45
COL9A3-209ENST00000469852 JMYQ8N9B5 988 aa17.88■□□□□ 0.45
COL9A3-209ENST00000469852 AATFQ9NY61 560 aaKnown RBP eCLIP17.88■□□□□ 0.45
COL9A3-209ENST00000469852 GGA3Q9NZ52 723 aa17.88■□□□□ 0.45
COL9A3-209ENST00000469852 IGSF3O75054 1194 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 LDHCP07864 332 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 RHBDL3P58872 404 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 UBE3CQ15386 1083 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 BMP2KLQ5H9B9 411 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 ANGEL2Q5VTE6 544 aaKnown RBP17.87■□□□□ 0.45
COL9A3-209ENST00000469852 PNMA8AQ86V59 439 aaPredicted RBP17.87■□□□□ 0.45
COL9A3-209ENST00000469852 SLF2Q8IX21 1173 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 SMC1BQ8NDV3 1235 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 OSBP2Q969R2 916 aa17.87■□□□□ 0.45
COL9A3-209ENST00000469852 SEC62Q99442 399 aaKnown RBP17.87■□□□□ 0.45
COL9A3-209ENST00000469852 PUS7LQ9H0K6 701 aaKnown RBP17.87■□□□□ 0.45
COL9A3-209ENST00000469852 ZNF70Q9UC06 446 aaPredicted RBP17.87■□□□□ 0.45
COL9A3-209ENST00000469852 M0R2C6 588 aa17.86■□□□□ 0.45
COL9A3-209ENST00000469852 SPDYE2Q495Y8 402 aa17.86■□□□□ 0.45
COL9A3-209ENST00000469852 ZMYM1Q5SVZ6 1142 aa17.86■□□□□ 0.45
COL9A3-209ENST00000469852 ZSCAN25Q6NSZ9 544 aa17.86■□□□□ 0.45
COL9A3-209ENST00000469852 SH3RF3Q8TEJ3 882 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-209ENST00000469852 FAM227BQ96M60 508 aa17.86■□□□□ 0.45
COL9A3-209ENST00000469852 RIOK1Q9BRS2 568 aaKnown RBP17.86■□□□□ 0.45
COL9A3-209ENST00000469852 RFX7Q2KHR2 1363 aa17.86■□□□□ 0.45
COL9A3-209ENST00000469852 FOCADQ5VW36 1801 aa17.86■□□□□ 0.45
COL9A3-209ENST00000469852 A0A0D9SFI3 127 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 PPP4CP60510 307 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 NFIAQ12857 509 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 NMIQ13287 307 aaPredicted RBP17.85■□□□□ 0.45
COL9A3-209ENST00000469852 DLK2Q6UY11 383 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 LCORLQ8N3X6 602 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 ARMT1Q9H993 441 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 USP40Q9NVE5 1235 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 PGAP2Q9UHJ9 254 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 CLEC11AQ9Y240 323 aa17.85■□□□□ 0.45
COL9A3-209ENST00000469852 MAGEB6P1A0A0J9YX57 407 aa17.84■□□□□ 0.45
COL9A3-209ENST00000469852 MBD4O95243 580 aa17.84■□□□□ 0.45
COL9A3-209ENST00000469852 ZFYP08048 801 aaPredicted RBP17.84■□□□□ 0.45
COL9A3-209ENST00000469852 MAP1SQ66K74 1059 aaPredicted RBP17.84■□□□□ 0.45
COL9A3-209ENST00000469852 APPBP2Q92624 585 aa17.84■□□□□ 0.45
COL9A3-209ENST00000469852 IL25Q9H293 177 aa17.84■□□□□ 0.45
COL9A3-209ENST00000469852 VEZTQ9HBM0 779 aa17.84■□□□□ 0.45
COL9A3-209ENST00000469852 DDX4Q9NQI0 724 aaKnown RBP17.84■□□□□ 0.45
COL9A3-209ENST00000469852 CNTNAP1P78357 1384 aa17.83■□□□□ 0.45
COL9A3-209ENST00000469852 WDHD1O75717 1129 aaPredicted RBP17.83■□□□□ 0.44
COL9A3-209ENST00000469852 TMED8Q6PL24 325 aaPredicted RBP17.83■□□□□ 0.44
COL9A3-209ENST00000469852 CCDC129Q6ZRS4 1044 aa17.83■□□□□ 0.44
COL9A3-209ENST00000469852 LDHDQ86WU2 507 aa17.83■□□□□ 0.44
COL9A3-209ENST00000469852 ZC3H15Q8WU90 426 aaKnown RBP17.83■□□□□ 0.44
COL9A3-209ENST00000469852 TCP10L2B9ZVM9 353 aa17.82■□□□□ 0.44
COL9A3-209ENST00000469852 ADM5C9JUS6 153 aa17.82■□□□□ 0.44
COL9A3-209ENST00000469852 PRKAB2O43741 272 aa17.82■□□□□ 0.44
COL9A3-209ENST00000469852 MYO1BO43795 1136 aa17.82■□□□□ 0.44
COL9A3-209ENST00000469852 BAG3O95817 575 aa17.82■□□□□ 0.44
COL9A3-209ENST00000469852 CHMLP26374 656 aa17.82■□□□□ 0.44
COL9A3-209ENST00000469852 NOL10Q9BSC4 688 aaKnown RBP17.82■□□□□ 0.44
COL9A3-209ENST00000469852 GLIS2Q9BZE0 524 aaPredicted RBP17.82■□□□□ 0.44
COL9A3-209ENST00000469852 FAM198AQ9UFP1 575 aa17.82■□□□□ 0.44
COL9A3-209ENST00000469852 DDX60LQ5H9U9 1706 aaKnown RBP17.81■□□□□ 0.44
COL9A3-209ENST00000469852 PITPNM2Q9BZ72 1349 aa17.81■□□□□ 0.44
COL9A3-209ENST00000469852 FMR1Q06787 632 aaKnown RBP eCLIP17.81■□□□□ 0.44
COL9A3-209ENST00000469852 LRRFIP1Q32MZ4 808 aaKnown RBP17.81■□□□□ 0.44
COL9A3-209ENST00000469852 CWC27Q6UX04 472 aaKnown RBP17.81■□□□□ 0.44
COL9A3-209ENST00000469852 ZNF589Q86UQ0 364 aaPredicted RBP17.81■□□□□ 0.44
COL9A3-209ENST00000469852 CDAN1Q8IWY9 1227 aa17.81■□□□□ 0.44
COL9A3-209ENST00000469852 ZFPM1Q8IX07 1006 aa17.81■□□□□ 0.44
COL9A3-209ENST00000469852 TEX11Q8IYF3 940 aa17.81■□□□□ 0.44
COL9A3-209ENST00000469852 NAV1Q8NEY1 1877 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 GPAA1O43292 621 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 PICALMQ13492 652 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 PRAMEF18Q5VWM3 479 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 CHADLQ6NUI6 762 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 USP48Q86UV5 1035 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 SDR42E1Q8WUS8 393 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 AIDAQ96BJ3 306 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 DCPSQ96C86 337 aaKnown RBP17.8■□□□□ 0.44
COL9A3-209ENST00000469852 STRBPQ96SI9 672 aaKnown RBP17.8■□□□□ 0.44
COL9A3-209ENST00000469852 IDI2Q9BXS1 227 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 DIAPH3Q9NSV4 1193 aa17.8■□□□□ 0.44
COL9A3-209ENST00000469852 BAZ2AQ9UIF9 1905 aaKnown RBP17.79■□□□□ 0.44
COL9A3-209ENST00000469852 TRAF5O00463 557 aa17.79■□□□□ 0.44
COL9A3-209ENST00000469852 FOXP2O15409 715 aa17.79■□□□□ 0.44
COL9A3-209ENST00000469852 TCP10Q12799 353 aa17.79■□□□□ 0.44
COL9A3-209ENST00000469852 COL13A1Q5TAT6 717 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-209ENST00000469852 KRT26Q7Z3Y9 468 aa17.79■□□□□ 0.44
COL9A3-209ENST00000469852 TICAM2Q86XR7 235 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms