RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 FAM95CA0A1B0GW59 222 aa9.39□□□□□ -0.91
SYNE1-218ENST00000468937 USP17L7P0C7H9 530 aa9.39□□□□□ -0.91
SYNE1-218ENST00000468937 PAOXQ6QHF9 649 aa9.39□□□□□ -0.91
SYNE1-218ENST00000468937 TPTE2Q6XPS3 522 aa9.39□□□□□ -0.91
SYNE1-218ENST00000468937 NPAS4Q8IUM7 802 aa9.39□□□□□ -0.91
SYNE1-218ENST00000468937 KCNB2Q92953 911 aa9.39□□□□□ -0.91
SYNE1-218ENST00000468937 DUSP9Q99956 384 aaKnown RBP9.39□□□□□ -0.91
SYNE1-218ENST00000468937 WDR18Q9BV38 432 aa9.39□□□□□ -0.91
SYNE1-218ENST00000468937 CCDC86Q9H6F5 360 aaKnown RBP9.39□□□□□ -0.91
SYNE1-218ENST00000468937 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.38□□□□□ -0.91
SYNE1-218ENST00000468937 SCO2A0A1W2PP80 73 aa9.38□□□□□ -0.91
SYNE1-218ENST00000468937 ZBTB7CA1YPR0 619 aa9.38□□□□□ -0.91
SYNE1-218ENST00000468937 HOMEZQ8IX15 550 aa9.38□□□□□ -0.91
SYNE1-218ENST00000468937 GIMAP7Q8NHV1 300 aa9.38□□□□□ -0.91
SYNE1-218ENST00000468937 ZC3H12CQ9C0D7 883 aaKnown RBP9.38□□□□□ -0.91
SYNE1-218ENST00000468937 ACTL7BQ9Y614 415 aa9.38□□□□□ -0.91
SYNE1-218ENST00000468937 AK5Q9Y6K8 562 aa9.38□□□□□ -0.91
SYNE1-218ENST00000468937 LIG1P18858 919 aa9.37□□□□□ -0.91
SYNE1-218ENST00000468937 ASPAP45381 313 aa9.37□□□□□ -0.91
SYNE1-218ENST00000468937 NFKBIBQ15653 356 aa9.37□□□□□ -0.91
SYNE1-218ENST00000468937 CDPF1Q6NVV7 123 aa9.37□□□□□ -0.91
SYNE1-218ENST00000468937 PDZD3Q86UT5 571 aa9.37□□□□□ -0.91
SYNE1-218ENST00000468937 FBLIM1Q8WUP2 373 aa9.37□□□□□ -0.91
SYNE1-218ENST00000468937 CBX8Q9HC52 389 aa9.37□□□□□ -0.91
SYNE1-218ENST00000468937 ITGAEP38570 1179 aa9.36□□□□□ -0.91
SYNE1-218ENST00000468937 MAP7Q14244 749 aa9.36□□□□□ -0.91
SYNE1-218ENST00000468937 LRRC14Q15048 493 aa9.36□□□□□ -0.91
SYNE1-218ENST00000468937 KIF4BQ2VIQ3 1234 aa9.36□□□□□ -0.91
SYNE1-218ENST00000468937 EZH1Q92800 747 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-218ENST00000468937 TTF2Q9UNY4 1162 aaKnown RBP9.36□□□□□ -0.91
SYNE1-218ENST00000468937 ENC1O14682 589 aa9.35□□□□□ -0.91
SYNE1-218ENST00000468937 XPCQ01831 940 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-218ENST00000468937 ID3Q02535 119 aa9.35□□□□□ -0.91
SYNE1-218ENST00000468937 ATXN3LQ9H3M9 355 aa9.35□□□□□ -0.91
SYNE1-218ENST00000468937 GSX1Q9H4S2 264 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-218ENST00000468937 LOC100996750A0A140TA64 210 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 ZNF862O60290 1169 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 FBXO24O75426 580 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 LRP8Q14114 963 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 MAP1SQ66K74 1059 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-218ENST00000468937 SCARA3Q6AZY7 606 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 SV2BQ7L1I2 683 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 Q8N3U1 123 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 KRTAP4-6Q9BYQ5 205 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 FAM105AQ9NUU6 356 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 CRIM1Q9NZV1 1036 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 PARP2Q9UGN5 583 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 PPP1R9AQ9ULJ8 1098 aa9.34□□□□□ -0.91
SYNE1-218ENST00000468937 TMPRSS2O15393 492 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 RAB6AP20340 208 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 ZNF252P-AS1Q0IIN9 211 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 PSMD2Q13200 908 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 ARTNQ5T4W7 220 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 ZDHHC13Q8IUH4 622 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 STK35Q8TDR2 534 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 WDR89Q96FK6 387 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-218ENST00000468937 ACSBG1Q96GR2 724 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 ACSS3Q9H6R3 686 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 PIDD1Q9HB75 910 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 ATG3Q9NT62 314 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 CYP8B1Q9UNU6 501 aa9.33□□□□□ -0.92
SYNE1-218ENST00000468937 NFICP08651 508 aa9.32□□□□□ -0.92
SYNE1-218ENST00000468937 BMP6P22004 513 aa9.32□□□□□ -0.92
SYNE1-218ENST00000468937 GRIK1P39086 918 aa9.32□□□□□ -0.92
SYNE1-218ENST00000468937 DAB2P98082 770 aa9.32□□□□□ -0.92
SYNE1-218ENST00000468937 SHKBP1Q8TBC3 707 aa9.32□□□□□ -0.92
SYNE1-218ENST00000468937 MFSD14AQ96MC6 490 aa9.32□□□□□ -0.92
SYNE1-218ENST00000468937 ZFP64Q9NPA5 681 aa9.32□□□□□ -0.92
SYNE1-218ENST00000468937 COBLO75128 1261 aa9.31□□□□□ -0.92
SYNE1-218ENST00000468937 TRIM37O94972 964 aa9.31□□□□□ -0.92
SYNE1-218ENST00000468937 CPSF6Q16630 551 aaKnown RBP eCLIP9.31□□□□□ -0.92
SYNE1-218ENST00000468937 LLGL2Q6P1M3 1020 aa9.31□□□□□ -0.92
SYNE1-218ENST00000468937 INTS5Q6P9B9 1019 aaKnown RBP9.31□□□□□ -0.92
SYNE1-218ENST00000468937 FBXO33Q7Z6M2 555 aa9.31□□□□□ -0.92
SYNE1-218ENST00000468937 FANCD2OSQ96PS1 177 aa9.31□□□□□ -0.92
SYNE1-218ENST00000468937 SEMA6CQ9H3T2 930 aa9.31□□□□□ -0.92
SYNE1-218ENST00000468937 WDR64B1ANS9 1081 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 PAGE1O75459 146 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 TMC4Q7Z404 712 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 FBXL6Q8N531 539 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 GPBAR1Q8TDU6 330 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 TBC1D32Q96NH3 1257 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 METTL22Q9BUU2 404 aaPredicted RBP9.3□□□□□ -0.92
SYNE1-218ENST00000468937 PRKAG2Q9UGJ0 569 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 PCDHGC5Q9Y5F6 944 aa9.3□□□□□ -0.92
SYNE1-218ENST00000468937 CELA3AP09093 270 aa9.29□□□□□ -0.92
SYNE1-218ENST00000468937 CCDC85BQ15834 202 aaPredicted RBP9.29□□□□□ -0.92
SYNE1-218ENST00000468937 PCNX4Q63HM2 1172 aa9.29□□□□□ -0.92
SYNE1-218ENST00000468937 OSBPL1AQ9BXW6 950 aa9.29□□□□□ -0.92
SYNE1-218ENST00000468937 BCL11AQ9H165 835 aa9.29□□□□□ -0.92
SYNE1-218ENST00000468937 CACNA2D2Q9NY47 1150 aa9.29□□□□□ -0.92
SYNE1-218ENST00000468937 DAGLAQ9Y4D2 1042 aa9.29□□□□□ -0.92
SYNE1-218ENST00000468937 TGFB1P01137 390 aa9.28□□□□□ -0.92
SYNE1-218ENST00000468937 ERVK-24P63145 666 aa9.28□□□□□ -0.92
SYNE1-218ENST00000468937 CYP27A1Q02318 531 aa9.28□□□□□ -0.92
SYNE1-218ENST00000468937 ZC3H12AQ5D1E8 599 aaKnown RBP9.28□□□□□ -0.92
SYNE1-218ENST00000468937 TMCO4Q5TGY1 634 aa9.28□□□□□ -0.92
SYNE1-218ENST00000468937 ZAR1Q86SH2 424 aa9.28□□□□□ -0.92
SYNE1-218ENST00000468937 GRIN3AQ8TCU5 1115 aa9.28□□□□□ -0.92
SYNE1-218ENST00000468937 MRS2Q9HD23 443 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms