RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 PATL2C9JE40 543 aaKnown RBP12.84□□□□□ -0.35
MSX1-202ENST00000468421 FGAP02671 866 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 CYP21A2P08686 494 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 GNAT2P19087 354 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 BTDP43251 543 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 ANAPC15P60006 121 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 PPP4CP60510 307 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 RSBN1LQ6PCB5 846 aaPredicted RBP12.84□□□□□ -0.35
MSX1-202ENST00000468421 SH3RF3Q8TEJ3 882 aaPredicted RBP12.84□□□□□ -0.35
MSX1-202ENST00000468421 JDP2Q8WYK2 163 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 GMLQ99445 158 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 PCDHAC2Q9Y5I4 1007 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 ZMYM6O95789 1325 aa12.84□□□□□ -0.35
MSX1-202ENST00000468421 APPP05067 770 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 ANP32AP39687 249 aaKnown RBP12.83□□□□□ -0.36
MSX1-202ENST00000468421 CRKP46108 304 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 COL9A3Q14050 684 aaPredicted RBP12.83□□□□□ -0.36
MSX1-202ENST00000468421 ALX1Q15699 326 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 ADCK5Q3MIX3 580 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 CIAPIN1Q6FI81 312 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 SLF2Q8IX21 1173 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 IFNL3Q8IZI9 196 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 ZBTB12Q9Y330 459 aaPredicted RBP12.83□□□□□ -0.36
MSX1-202ENST00000468421 MYO3BQ8WXR4 1341 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 ZNF541Q9H0D2 1346 aa12.83□□□□□ -0.36
MSX1-202ENST00000468421 RPAP1Q9BWH6 1393 aaPredicted RBP12.82□□□□□ -0.36
MSX1-202ENST00000468421 FZD9O00144 591 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 LMNB1P20700 586 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 RHBDL3P58872 404 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 HAND2P61296 217 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 RNF20Q5VTR2 975 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 HHIPL2Q6UWX4 724 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 STOX1Q6ZVD7 989 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 TEKT1Q969V4 418 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 NOL10Q9BSC4 688 aaKnown RBP12.82□□□□□ -0.36
MSX1-202ENST00000468421 CRNKL1Q9BZJ0 848 aaKnown RBP12.82□□□□□ -0.36
MSX1-202ENST00000468421 NBPF3Q9H094 633 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 NAPBQ9H115 298 aa12.82□□□□□ -0.36
MSX1-202ENST00000468421 SIPA1L1O43166 1804 aa12.81□□□□□ -0.36
MSX1-202ENST00000468421 BAG3O95817 575 aa12.81□□□□□ -0.36
MSX1-202ENST00000468421 HDLBPQ00341 1268 aaKnown RBP12.81□□□□□ -0.36
MSX1-202ENST00000468421 RABEP1Q15276 862 aa12.81□□□□□ -0.36
MSX1-202ENST00000468421 TSGA10IPQ3SY00 556 aa12.81□□□□□ -0.36
MSX1-202ENST00000468421 APOBEC3HQ6NTF7 200 aaKnown RBP12.81□□□□□ -0.36
MSX1-202ENST00000468421 JAKMIP1Q96N16 626 aaKnown RBP12.81□□□□□ -0.36
MSX1-202ENST00000468421 DCP1AQ9NPI6 582 aaPredicted RBP12.81□□□□□ -0.36
MSX1-202ENST00000468421 CTNNA3Q9UI47 895 aa12.81□□□□□ -0.36
MSX1-202ENST00000468421 SHTN1A0MZ66 631 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 SMIM22K7EJ46 135 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 CD2BP2O95400 341 aaKnown RBP12.8□□□□□ -0.36
MSX1-202ENST00000468421 CPA1P15085 419 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 ZKSCAN1P17029 563 aaPredicted RBP12.8□□□□□ -0.36
MSX1-202ENST00000468421 TDO2P48775 406 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 EIF6P56537 245 aaKnown RBP12.8□□□□□ -0.36
MSX1-202ENST00000468421 IMMTQ16891 758 aaKnown RBP12.8□□□□□ -0.36
MSX1-202ENST00000468421 TBC1D10CQ8IV04 446 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 TEX11Q8IYF3 940 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 AGBL3Q8NEM8 1001 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 ZDHHC15Q96MV8 337 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 MRIQ9BWK5 157 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 UPF3BQ9BZI7 483 aaKnown RBP12.8□□□□□ -0.36
MSX1-202ENST00000468421 MKRN1Q9UHC7 482 aaKnown RBP12.8□□□□□ -0.36
MSX1-202ENST00000468421 SERPINA10Q9UK55 444 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 TACC3Q9Y6A5 838 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 MYH8P13535 1937 aa12.8□□□□□ -0.36
MSX1-202ENST00000468421 UTRNP46939 3433 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 CYP2D7A0A087X1C5 515 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 E7EWF7 191 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 PLCG2P16885 1265 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 USP5P45974 858 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 RBM5P52756 815 aaKnown RBP eCLIP12.79□□□□□ -0.36
MSX1-202ENST00000468421 EVX2Q03828 476 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 CTDSPL2Q05D32 466 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 TNIP1Q15025 636 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 CFAP100Q494V2 611 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 CDC42EP5Q6NZY7 148 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 GIMAP6Q6P9H5 292 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 CERS3Q8IU89 383 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 TGFBRAP1Q8WUH2 860 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 NACAP1Q9BZK3 213 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 ATP8A2Q9NTI2 1148 aa12.79□□□□□ -0.36
MSX1-202ENST00000468421 ZNF213O14771 459 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 WDHD1O75717 1129 aaPredicted RBP12.78□□□□□ -0.36
MSX1-202ENST00000468421 USP17L8P0C7I0 530 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 CYP2D6P10635 497 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 CASTP20810 708 aaKnown RBP12.78□□□□□ -0.36
MSX1-202ENST00000468421 GPR162Q16538 588 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 CTR9Q6PD62 1173 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 MAPKAPK5Q8IW41 473 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 NKX2-3Q8TAU0 364 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 TM6SF1Q9BZW5 370 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 ZSWIM6Q9HCJ5 1215 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 DDX4Q9NQI0 724 aaKnown RBP12.78□□□□□ -0.36
MSX1-202ENST00000468421 USP40Q9NVE5 1235 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 RNF181Q9P0P0 153 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 HDAC9Q9UKV0 1011 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 GJA3Q9Y6H8 435 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 FLT1P17948 1338 aa12.78□□□□□ -0.36
MSX1-202ENST00000468421 GOLGB1Q14789 3259 aaKnown RBP12.78□□□□□ -0.36
MSX1-202ENST00000468421 MINDY4BA8MYZ0 360 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms