RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SPDYE5A6NIY4 337 aa23.8■■□□□ 1.4
COL9A3-206ENST00000466532 SEMA3EO15041 775 aa23.8■■□□□ 1.4
COL9A3-206ENST00000466532 GNAI3P08754 354 aa23.8■■□□□ 1.4
COL9A3-206ENST00000466532 DCAF15Q66K64 600 aa23.8■■□□□ 1.4
COL9A3-206ENST00000466532 CD99L2Q8TCZ2 262 aa23.8■■□□□ 1.4
COL9A3-206ENST00000466532 ZKSCAN4Q969J2 545 aaPredicted RBP23.8■■□□□ 1.4
COL9A3-206ENST00000466532 RBBP6Q7Z6E9 1792 aaKnown RBP23.8■■□□□ 1.4
COL9A3-206ENST00000466532 SALL1Q9NSC2 1324 aa23.8■■□□□ 1.4
COL9A3-206ENST00000466532 ADORA1P30542 326 aa23.79■■□□□ 1.4
COL9A3-206ENST00000466532 CDC42EP5Q6NZY7 148 aa23.79■■□□□ 1.4
COL9A3-206ENST00000466532 FAM151AQ8WW52 585 aa23.79■■□□□ 1.4
COL9A3-206ENST00000466532 SRGAP3O43295 1099 aa23.78■■□□□ 1.4
COL9A3-206ENST00000466532 SP3Q02447 781 aa23.78■■□□□ 1.4
COL9A3-206ENST00000466532 TAF1CQ15572 869 aaPredicted RBP23.78■■□□□ 1.4
COL9A3-206ENST00000466532 CCDC102BQ68D86 513 aa23.78■■□□□ 1.4
COL9A3-206ENST00000466532 ERO1BQ86YB8 467 aa23.78■■□□□ 1.4
COL9A3-206ENST00000466532 ZNF341Q9BYN7 854 aa23.78■■□□□ 1.4
COL9A3-206ENST00000466532 TCP10Q12799 353 aa23.77■■□□□ 1.4
COL9A3-206ENST00000466532 MIGA2Q7L4E1 593 aa23.77■■□□□ 1.4
COL9A3-206ENST00000466532 ZSWIM8A7E2V4 1837 aa23.77■■□□□ 1.4
COL9A3-206ENST00000466532 IPO8O15397 1037 aaKnown RBP23.76■■□□□ 1.39
COL9A3-206ENST00000466532 TIMM10P62072 90 aa23.76■■□□□ 1.39
COL9A3-206ENST00000466532 FAM43AQ8N2R8 423 aa23.76■■□□□ 1.39
COL9A3-206ENST00000466532 EFCC1Q9HA90 598 aa23.76■■□□□ 1.39
COL9A3-206ENST00000466532 ZFYVE28Q9HCC9 887 aa23.76■■□□□ 1.39
COL9A3-206ENST00000466532 USP40Q9NVE5 1235 aa23.76■■□□□ 1.39
COL9A3-206ENST00000466532 CETPP11597 493 aa23.75■■□□□ 1.39
COL9A3-206ENST00000466532 TRIM27P14373 513 aa23.75■■□□□ 1.39
COL9A3-206ENST00000466532 NFIAQ12857 509 aa23.75■■□□□ 1.39
COL9A3-206ENST00000466532 MTX1Q13505 466 aa23.75■■□□□ 1.39
COL9A3-206ENST00000466532 ZGPATQ8N5A5 531 aaKnown RBP23.75■■□□□ 1.39
COL9A3-206ENST00000466532 FRAT1Q92837 279 aaPredicted RBP23.75■■□□□ 1.39
COL9A3-206ENST00000466532 PTPN22Q9Y2R2 807 aa23.75■■□□□ 1.39
COL9A3-206ENST00000466532 HTTP42858 3142 aa23.75■■□□□ 1.39
COL9A3-206ENST00000466532 A0A1B0GUL7 405 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 IRF6O14896 467 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 ZBTB22O15209 634 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 BCAR3O75815 825 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 INPP5BP32019 993 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 TFCP2Q12800 502 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 PPIL2Q13356 520 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 RASGRF1Q13972 1273 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 TNNQ9UQP3 1299 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 AKAP2Q9Y2D5 859 aa23.74■■□□□ 1.39
COL9A3-206ENST00000466532 SNAPC2Q13487 334 aa23.73■■□□□ 1.39
COL9A3-206ENST00000466532 ATF7IPQ6VMQ6 1270 aa23.73■■□□□ 1.39
COL9A3-206ENST00000466532 FAM198AQ9UFP1 575 aa23.73■■□□□ 1.39
COL9A3-206ENST00000466532 WDHD1O75717 1129 aaPredicted RBP23.72■■□□□ 1.39
COL9A3-206ENST00000466532 CAP1Q01518 475 aa23.72■■□□□ 1.39
COL9A3-206ENST00000466532 PPATQ06203 517 aa23.72■■□□□ 1.39
COL9A3-206ENST00000466532 DZIP1Q86YF9 867 aaKnown RBP23.72■■□□□ 1.39
COL9A3-206ENST00000466532 CLUAP1Q96AJ1 413 aa23.72■■□□□ 1.39
COL9A3-206ENST00000466532 XAGE2Q96GT9 111 aa23.72■■□□□ 1.39
COL9A3-206ENST00000466532 ABCF2Q9UG63 623 aa23.72■■□□□ 1.39
COL9A3-206ENST00000466532 PDS5AQ29RF7 1337 aaKnown RBP23.72■■□□□ 1.39
COL9A3-206ENST00000466532 DOCK1Q14185 1865 aa23.71■■□□□ 1.39
COL9A3-206ENST00000466532 BTBD19C9JJ37 291 aa23.71■■□□□ 1.39
COL9A3-206ENST00000466532 GNAI2P04899 355 aa23.71■■□□□ 1.39
COL9A3-206ENST00000466532 MVPQ14764 893 aaKnown RBP23.71■■□□□ 1.39
COL9A3-206ENST00000466532 ZCCHC17Q9NP64 241 aaKnown RBP23.71■■□□□ 1.39
COL9A3-206ENST00000466532 ZNF112Q9UJU3 913 aa23.71■■□□□ 1.39
COL9A3-206ENST00000466532 PTPRFP10586 1907 aa23.71■■□□□ 1.39
COL9A3-206ENST00000466532 GAKO14976 1311 aa23.7■■□□□ 1.38
COL9A3-206ENST00000466532 ZFPM1Q8IX07 1006 aa23.7■■□□□ 1.38
COL9A3-206ENST00000466532 NEUROD6Q96NK8 337 aa23.7■■□□□ 1.38
COL9A3-206ENST00000466532 RGS3P49796 1198 aa23.69■■□□□ 1.38
COL9A3-206ENST00000466532 ARHGEF6Q15052 776 aa23.69■■□□□ 1.38
COL9A3-206ENST00000466532 SPTY2D1Q68D10 685 aaPredicted RBP23.69■■□□□ 1.38
COL9A3-206ENST00000466532 SLF2Q8IX21 1173 aa23.69■■□□□ 1.38
COL9A3-206ENST00000466532 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.69■■□□□ 1.38
COL9A3-206ENST00000466532 CENPFP49454 3210 aa23.69■■□□□ 1.38
COL9A3-206ENST00000466532 PHIPQ8WWQ0 1821 aa23.68■■□□□ 1.38
COL9A3-206ENST00000466532 TLR2O60603 784 aa23.68■■□□□ 1.38
COL9A3-206ENST00000466532 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.68■■□□□ 1.38
COL9A3-206ENST00000466532 IDI2Q9BXS1 227 aa23.68■■□□□ 1.38
COL9A3-206ENST00000466532 MGAMO43451 1857 aa23.68■■□□□ 1.38
COL9A3-206ENST00000466532 RFX7Q2KHR2 1363 aa23.67■■□□□ 1.38
COL9A3-206ENST00000466532 MYO5AQ9Y4I1 1855 aaKnown RBP23.67■■□□□ 1.38
COL9A3-206ENST00000466532 PNMA6EA0A0J9YXQ4 647 aa23.67■■□□□ 1.38
COL9A3-206ENST00000466532 ENTPD3O75355 529 aa23.67■■□□□ 1.38
COL9A3-206ENST00000466532 NOL9Q5SY16 702 aaKnown RBP23.67■■□□□ 1.38
COL9A3-206ENST00000466532 ATAD5Q96QE3 1844 aa23.67■■□□□ 1.38
COL9A3-206ENST00000466532 KIAA0100Q14667 2235 aaKnown RBP23.67■■□□□ 1.38
COL9A3-206ENST00000466532 G3BP1Q13283 466 aaKnown RBP eCLIP23.66■■□□□ 1.38
COL9A3-206ENST00000466532 GORABQ5T7V8 394 aa23.66■■□□□ 1.38
COL9A3-206ENST00000466532 ZKSCAN2Q63HK3 967 aa23.66■■□□□ 1.38
COL9A3-206ENST00000466532 ERICH6Q7L0X2 663 aa23.66■■□□□ 1.38
COL9A3-206ENST00000466532 ZSCAN29Q8IWY8 852 aaPredicted RBP23.66■■□□□ 1.38
COL9A3-206ENST00000466532 TMEM57Q8N5G2 664 aa23.66■■□□□ 1.38
COL9A3-206ENST00000466532 ARMC5Q96C12 935 aa23.66■■□□□ 1.38
COL9A3-206ENST00000466532 FAM163AQ96GL9 167 aaPredicted RBP23.66■■□□□ 1.38
COL9A3-206ENST00000466532 ATRNL1Q5VV63 1379 aa23.65■■□□□ 1.38
COL9A3-206ENST00000466532 MAST2Q6P0Q8 1798 aa23.65■■□□□ 1.38
COL9A3-206ENST00000466532 MROH7-TTC4A0A0A0MT08 1334 aa23.65■■□□□ 1.38
COL9A3-206ENST00000466532 CDK5RAP2Q96SN8 1893 aa23.65■■□□□ 1.38
COL9A3-206ENST00000466532 POTEFA5A3E0 1075 aa23.65■■□□□ 1.38
COL9A3-206ENST00000466532 BTDP43251 543 aa23.65■■□□□ 1.38
COL9A3-206ENST00000466532 KCNH4Q9UQ05 1017 aa23.65■■□□□ 1.38
COL9A3-206ENST00000466532 HNRNPUQ00839 825 aaKnown RBP eCLIP23.64■■□□□ 1.37
COL9A3-206ENST00000466532 MECOMQ03112 1051 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms