RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 B4E1Z4 1266 aa21.48■■□□□ 1.03
COL9A3-205ENST00000466192 TDO2P48775 406 aa21.48■■□□□ 1.03
COL9A3-205ENST00000466192 CHAF1AQ13111 956 aaPredicted RBP21.48■■□□□ 1.03
COL9A3-205ENST00000466192 NSUN4Q96CB9 384 aaKnown RBP21.48■■□□□ 1.03
COL9A3-205ENST00000466192 RBM17Q96I25 401 aaKnown RBP21.48■■□□□ 1.03
COL9A3-205ENST00000466192 NRXN2Q9P2S2 1712 aa21.48■■□□□ 1.03
COL9A3-205ENST00000466192 SYCE3A1L190 88 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 ZBTB22O15209 634 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 HOXA10P31260 410 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-205ENST00000466192 GPSM2P81274 684 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 MECOMQ03112 1051 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 SDR42E1Q8WUS8 393 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 UBE2Q2Q8WVN8 375 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 JAG2Q9Y219 1238 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 KLF18A0A0U1RQI7 1052 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 PTPDC1A2A3K4 754 aa21.47■■□□□ 1.03
COL9A3-205ENST00000466192 KLRG2A4D1S0 409 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-205ENST00000466192 DYNLL1P63167 89 aaKnown RBP21.47■■□□□ 1.03
COL9A3-205ENST00000466192 GPR101Q96P66 508 aaPredicted RBP21.47■■□□□ 1.03
COL9A3-205ENST00000466192 SALL1Q9NSC2 1324 aa21.46■■□□□ 1.03
COL9A3-205ENST00000466192 PRDX5P30044 214 aa21.46■■□□□ 1.03
COL9A3-205ENST00000466192 HPS5Q9UPZ3 1129 aa21.46■■□□□ 1.03
COL9A3-205ENST00000466192 KIAA1551Q9HCM1 1747 aa21.46■■□□□ 1.03
COL9A3-205ENST00000466192 AKNAD1Q5T1N1 836 aa21.46■■□□□ 1.03
COL9A3-205ENST00000466192 NLGN1Q8N2Q7 840 aa21.46■■□□□ 1.03
COL9A3-205ENST00000466192 FAM173BQ6P4H8 233 aa21.45■■□□□ 1.02
COL9A3-205ENST00000466192 FAM184AQ8NB25 1140 aa21.45■■□□□ 1.02
COL9A3-205ENST00000466192 ANGEL1Q9UNK9 670 aaKnown RBP21.45■■□□□ 1.02
COL9A3-205ENST00000466192 LRRC37AA6NMS7 1700 aa21.45■■□□□ 1.02
COL9A3-205ENST00000466192 RGPD3A6NKT7 1758 aaPredicted RBP21.45■■□□□ 1.02
COL9A3-205ENST00000466192 RGPD4Q7Z3J3 1758 aa21.45■■□□□ 1.02
COL9A3-205ENST00000466192 GOLGA8BA8MQT2 603 aa21.44■■□□□ 1.02
COL9A3-205ENST00000466192 SH2B2O14492 632 aaPredicted RBP21.44■■□□□ 1.02
COL9A3-205ENST00000466192 BBOX1O75936 387 aa21.44■■□□□ 1.02
COL9A3-205ENST00000466192 HMGN5P82970 282 aaKnown RBP21.44■■□□□ 1.02
COL9A3-205ENST00000466192 C15orf52Q6ZUT6 534 aaKnown RBP21.44■■□□□ 1.02
COL9A3-205ENST00000466192 CRAMP1Q96RY5 1269 aa21.44■■□□□ 1.02
COL9A3-205ENST00000466192 RGS17Q9UGC6 210 aaPredicted RBP21.44■■□□□ 1.02
COL9A3-205ENST00000466192 PPFIA3O75145 1194 aa21.44■■□□□ 1.02
COL9A3-205ENST00000466192 UBE2HP62256 183 aa21.44■■□□□ 1.02
COL9A3-205ENST00000466192 TDRD7Q8NHU6 1098 aaKnown RBP21.44■■□□□ 1.02
COL9A3-205ENST00000466192 STAG1Q8WVM7 1258 aa21.44■■□□□ 1.02
COL9A3-205ENST00000466192 MYH15Q9Y2K3 1946 aa21.44■■□□□ 1.02
COL9A3-205ENST00000466192 LTBP1Q14766 1721 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 MFSD6Q6ZSS7 791 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 RAB11FIP4Q86YS3 637 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 IGDCC4Q8TDY8 1250 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 SYAP1Q96A49 352 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-205ENST00000466192 SENP2Q9HC62 589 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 ZSWIM5Q9P217 1185 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 MYH2Q9UKX2 1941 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 KDM4AO75164 1064 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 UFL1O94874 794 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 PPARAQ07869 468 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 CSPP1Q1MSJ5 1256 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 CHMP4CQ96CF2 233 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 TMEM87BQ96K49 555 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 CNNM2Q9H8M5 875 aa21.43■■□□□ 1.02
COL9A3-205ENST00000466192 H3BQV1 296 aa21.42■■□□□ 1.02
COL9A3-205ENST00000466192 NASPP49321 788 aaPredicted RBP21.42■■□□□ 1.02
COL9A3-205ENST00000466192 IFFO2Q5TF58 517 aa21.42■■□□□ 1.02
COL9A3-205ENST00000466192 LRSAM1Q6UWE0 723 aa21.42■■□□□ 1.02
COL9A3-205ENST00000466192 ZNF804AQ7Z570 1209 aa21.42■■□□□ 1.02
COL9A3-205ENST00000466192 FDPSP14324 419 aaKnown RBP21.41■■□□□ 1.02
COL9A3-205ENST00000466192 ATP2B4P23634 1241 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 KRT85P78386 507 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 FLAD1Q8NFF5 587 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 KRT23Q9C075 422 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 SMIM22K7EJ46 135 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 STK11IPQ8N1F8 1099 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 BRIP1Q9BX63 1249 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 LY9Q9HBG7 655 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 AATFQ9NY61 560 aaKnown RBP eCLIP21.41■■□□□ 1.02
COL9A3-205ENST00000466192 GGA1Q9UJY5 639 aa21.41■■□□□ 1.02
COL9A3-205ENST00000466192 MINDY4BA8MYZ0 360 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 POTEAQ6S8J7 498 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 WDR66Q8TBY9 1149 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 RBSNQ9H1K0 784 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 PODXL2Q9NZ53 605 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 ANAPC4Q9UJX5 808 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 COL11A2P13942 1736 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-205ENST00000466192 FOSBP53539 338 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 RESTQ13127 1097 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 RRP12Q5JTH9 1297 aaKnown RBP21.4■■□□□ 1.02
COL9A3-205ENST00000466192 SPTY2D1Q68D10 685 aaPredicted RBP21.4■■□□□ 1.02
COL9A3-205ENST00000466192 POLLQ9UGP5 575 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 KIF3AQ9Y496 699 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 LAMB1P07942 1786 aa21.4■■□□□ 1.02
COL9A3-205ENST00000466192 DHX16O60231 1041 aaKnown RBP21.39■■□□□ 1.01
COL9A3-205ENST00000466192 TMEM67Q5HYA8 995 aa21.39■■□□□ 1.01
COL9A3-205ENST00000466192 APOA5Q6Q788 366 aa21.39■■□□□ 1.01
COL9A3-205ENST00000466192 MMP10P09238 476 aa21.38■■□□□ 1.01
COL9A3-205ENST00000466192 TTC6Q86TZ1 520 aa21.38■■□□□ 1.01
COL9A3-205ENST00000466192 SGMS1Q86VZ5 419 aa21.38■■□□□ 1.01
COL9A3-205ENST00000466192 DZIP1Q86YF9 867 aaKnown RBP21.38■■□□□ 1.01
COL9A3-205ENST00000466192 TBC1D16Q8TBP0 767 aa21.38■■□□□ 1.01
COL9A3-205ENST00000466192 RNF41Q9H4P4 317 aaPredicted RBP21.38■■□□□ 1.01
COL9A3-205ENST00000466192 CD209Q9NNX6 404 aa21.38■■□□□ 1.01
COL9A3-205ENST00000466192 TOMM22Q9NS69 142 aa21.38■■□□□ 1.01
COL9A3-205ENST00000466192 TFIP11Q9UBB9 837 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms