RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 TMEM39BQ9GZU3 492 aa21.84■■□□□ 1.09
COL7A1-205ENST00000465238 GJA5P36382 358 aa21.83■■□□□ 1.09
COL7A1-205ENST00000465238 FBXO46Q6PJ61 603 aaPredicted RBP21.83■■□□□ 1.09
COL7A1-205ENST00000465238 CDAN1Q8IWY9 1227 aa21.83■■□□□ 1.09
COL7A1-205ENST00000465238 WDR66Q8TBY9 1149 aa21.83■■□□□ 1.09
COL7A1-205ENST00000465238 TMOD2Q9NZR1 351 aa21.83■■□□□ 1.09
COL7A1-205ENST00000465238 PDE4DIPQ5VU43 2346 aa21.83■■□□□ 1.08
COL7A1-205ENST00000465238 FKBP1CQ5VVH2 108 aa21.82■■□□□ 1.08
COL7A1-205ENST00000465238 HHIPL2Q6UWX4 724 aa21.82■■□□□ 1.08
COL7A1-205ENST00000465238 OPTNQ96CV9 577 aa21.82■■□□□ 1.08
COL7A1-205ENST00000465238 ELP3Q9H9T3 547 aa21.82■■□□□ 1.08
COL7A1-205ENST00000465238 TESPA1A2RU30 521 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-205ENST00000465238 MAP3K9P80192 1104 aa21.81■■□□□ 1.08
COL7A1-205ENST00000465238 TFCP2Q12800 502 aa21.81■■□□□ 1.08
COL7A1-205ENST00000465238 ATP2B3Q16720 1220 aa21.81■■□□□ 1.08
COL7A1-205ENST00000465238 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-205ENST00000465238 FAM83AQ86UY5 434 aa21.81■■□□□ 1.08
COL7A1-205ENST00000465238 NOP58Q9Y2X3 529 aaKnown RBP21.81■■□□□ 1.08
COL7A1-205ENST00000465238 CACNB3P54284 484 aa21.8■■□□□ 1.08
COL7A1-205ENST00000465238 APOBEC3HQ6NTF7 200 aaKnown RBP21.8■■□□□ 1.08
COL7A1-205ENST00000465238 SIRT2Q8IXJ6 389 aa21.8■■□□□ 1.08
COL7A1-205ENST00000465238 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.8■■□□□ 1.08
COL7A1-205ENST00000465238 HOOK2Q96ED9 719 aa21.8■■□□□ 1.08
COL7A1-205ENST00000465238 AKAP2Q9Y2D5 859 aa21.8■■□□□ 1.08
COL7A1-205ENST00000465238 CSADQ9Y600 493 aa21.8■■□□□ 1.08
COL7A1-205ENST00000465238 VGLL4Q14135 290 aa21.79■■□□□ 1.08
COL7A1-205ENST00000465238 HSP90AB4PQ58FF6 505 aa21.79■■□□□ 1.08
COL7A1-205ENST00000465238 GNL3LQ9NVN8 582 aaKnown RBP21.79■■□□□ 1.08
COL7A1-205ENST00000465238 AAMPQ13685 434 aa21.78■■□□□ 1.08
COL7A1-205ENST00000465238 PTPN18Q99952 460 aa21.78■■□□□ 1.08
COL7A1-205ENST00000465238 CRHR2Q13324 411 aa21.77■■□□□ 1.08
COL7A1-205ENST00000465238 ERC1Q8IUD2 1116 aa21.77■■□□□ 1.08
COL7A1-205ENST00000465238 MS4A4AQ96JQ5 239 aa21.77■■□□□ 1.08
COL7A1-205ENST00000465238 EXOC6BQ9Y2D4 811 aa21.77■■□□□ 1.08
COL7A1-205ENST00000465238 RPAP1Q9BWH6 1393 aaPredicted RBP21.76■■□□□ 1.07
COL7A1-205ENST00000465238 GTF2A2P52657 109 aa21.76■■□□□ 1.07
COL7A1-205ENST00000465238 ERO1AQ96HE7 468 aa21.76■■□□□ 1.07
COL7A1-205ENST00000465238 NEUROD6Q96NK8 337 aa21.76■■□□□ 1.07
COL7A1-205ENST00000465238 TRIM17Q9Y577 477 aa21.76■■□□□ 1.07
COL7A1-205ENST00000465238 SEMA3EO15041 775 aa21.75■■□□□ 1.07
COL7A1-205ENST00000465238 TIMM10P62072 90 aa21.75■■□□□ 1.07
COL7A1-205ENST00000465238 DCAF15Q66K64 600 aa21.75■■□□□ 1.07
COL7A1-205ENST00000465238 OTOP1Q7RTM1 612 aa21.75■■□□□ 1.07
COL7A1-205ENST00000465238 EXOC6Q8TAG9 804 aa21.75■■□□□ 1.07
COL7A1-205ENST00000465238 CNKSR2Q8WXI2 1034 aa21.75■■□□□ 1.07
COL7A1-205ENST00000465238 PCDHB15Q9Y5E8 787 aa21.75■■□□□ 1.07
COL7A1-205ENST00000465238 HTTP42858 3142 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 CCL15-CCL14A0A0B4J2E2 113 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 A0A1B0GUL7 405 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 SPDYE5A6NIY4 337 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 ZBTB22O15209 634 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 CCL15Q16663 113 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 BRI3BPQ8WY22 251 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 OTUD5Q96G74 571 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 WRNIP1Q96S55 665 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 GPR108Q9NPR9 543 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 DENND2AQ9ULE3 1009 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 SALL1Q9NSC2 1324 aa21.74■■□□□ 1.07
COL7A1-205ENST00000465238 LDHBP07195 334 aaKnown RBP21.73■■□□□ 1.07
COL7A1-205ENST00000465238 CENPBP07199 599 aaPredicted RBP21.73■■□□□ 1.07
COL7A1-205ENST00000465238 PRDX5P30044 214 aa21.73■■□□□ 1.07
COL7A1-205ENST00000465238 IRX6P78412 446 aaPredicted RBP21.73■■□□□ 1.07
COL7A1-205ENST00000465238 SP3Q02447 781 aa21.73■■□□□ 1.07
COL7A1-205ENST00000465238 ERO1BQ86YB8 467 aa21.73■■□□□ 1.07
COL7A1-205ENST00000465238 FAM151AQ8WW52 585 aa21.73■■□□□ 1.07
COL7A1-205ENST00000465238 DAGLAQ9Y4D2 1042 aa21.73■■□□□ 1.07
COL7A1-205ENST00000465238 SNCAIPQ9Y6H5 919 aa21.73■■□□□ 1.07
COL7A1-205ENST00000465238 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.73■■□□□ 1.07
COL7A1-205ENST00000465238 APBB1O00213 710 aa21.72■■□□□ 1.07
COL7A1-205ENST00000465238 RAB11FIP3O75154 756 aa21.72■■□□□ 1.07
COL7A1-205ENST00000465238 PHKA1P46020 1223 aa21.72■■□□□ 1.07
COL7A1-205ENST00000465238 DIXDC1Q155Q3 683 aa21.72■■□□□ 1.07
COL7A1-205ENST00000465238 GORABQ5T7V8 394 aa21.72■■□□□ 1.07
COL7A1-205ENST00000465238 XAGE2Q96GT9 111 aa21.72■■□□□ 1.07
COL7A1-205ENST00000465238 AK9Q5TCS8 1911 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 ADORA1P30542 326 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 TAF1CQ15572 869 aaPredicted RBP21.71■■□□□ 1.07
COL7A1-205ENST00000465238 TNNI3KQ59H18 835 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 CDC42EP5Q6NZY7 148 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 RHPN1Q8TCX5 695 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 CD99L2Q8TCZ2 262 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 ZKSCAN4Q969J2 545 aaPredicted RBP21.71■■□□□ 1.07
COL7A1-205ENST00000465238 ZNF341Q9BYN7 854 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 ZFYVE28Q9HCC9 887 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 FPGT-TNNI3KV9GXZ4 949 aa21.71■■□□□ 1.07
COL7A1-205ENST00000465238 WDHD1O75717 1129 aaPredicted RBP21.7■■□□□ 1.06
COL7A1-205ENST00000465238 CETPP11597 493 aa21.7■■□□□ 1.06
COL7A1-205ENST00000465238 CCDC102BQ68D86 513 aa21.7■■□□□ 1.06
COL7A1-205ENST00000465238 ZGPATQ8N5A5 531 aaKnown RBP21.7■■□□□ 1.06
COL7A1-205ENST00000465238 KIF1BPQ96EK5 621 aa21.7■■□□□ 1.06
COL7A1-205ENST00000465238 EFCC1Q9HA90 598 aa21.7■■□□□ 1.06
COL7A1-205ENST00000465238 PPIL2Q13356 520 aa21.69■■□□□ 1.06
COL7A1-205ENST00000465238 SNAPC2Q13487 334 aa21.69■■□□□ 1.06
COL7A1-205ENST00000465238 FAM43AQ8N2R8 423 aa21.69■■□□□ 1.06
COL7A1-205ENST00000465238 DCTPP1Q9H773 170 aa21.69■■□□□ 1.06
COL7A1-205ENST00000465238 ZCCHC17Q9NP64 241 aaKnown RBP21.69■■□□□ 1.06
COL7A1-205ENST00000465238 PTPN22Q9Y2R2 807 aa21.69■■□□□ 1.06
COL7A1-205ENST00000465238 TCP10Q12799 353 aa21.68■■□□□ 1.06
COL7A1-205ENST00000465238 ARHGEF6Q15052 776 aa21.68■■□□□ 1.06
COL7A1-205ENST00000465238 MIGA2Q7L4E1 593 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms