RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 PDE8BO95263 885 aa21.4■■□□□ 1.02
CPSF4-209ENST00000465132 CHAF1AQ13111 956 aaPredicted RBP21.4■■□□□ 1.02
CPSF4-209ENST00000465132 CAVIN4Q5BKX8 364 aa21.4■■□□□ 1.02
CPSF4-209ENST00000465132 VGLL2Q8N8G2 317 aa21.4■■□□□ 1.02
CPSF4-209ENST00000465132 KIF1BPQ96EK5 621 aa21.4■■□□□ 1.02
CPSF4-209ENST00000465132 ELP3Q9H9T3 547 aa21.4■■□□□ 1.02
CPSF4-209ENST00000465132 PA2G4Q9UQ80 394 aaKnown RBP21.4■■□□□ 1.02
CPSF4-209ENST00000465132 ARAP2Q8WZ64 1704 aa21.4■■□□□ 1.02
CPSF4-209ENST00000465132 HDLBPQ00341 1268 aaKnown RBP21.39■■□□□ 1.01
CPSF4-209ENST00000465132 PUM3Q15397 648 aaKnown RBP21.39■■□□□ 1.01
CPSF4-209ENST00000465132 OTOP1Q7RTM1 612 aa21.39■■□□□ 1.01
CPSF4-209ENST00000465132 TBC1D22AQ8WUA7 517 aa21.39■■□□□ 1.01
CPSF4-209ENST00000465132 OPTNQ96CV9 577 aa21.39■■□□□ 1.01
CPSF4-209ENST00000465132 PTPN18Q99952 460 aa21.39■■□□□ 1.01
CPSF4-209ENST00000465132 TMEM39BQ9GZU3 492 aa21.39■■□□□ 1.01
CPSF4-209ENST00000465132 GPR108Q9NPR9 543 aa21.39■■□□□ 1.01
CPSF4-209ENST00000465132 TRIM17Q9Y577 477 aa21.39■■□□□ 1.01
CPSF4-209ENST00000465132 FRAT2O75474 233 aaPredicted RBP21.38■■□□□ 1.01
CPSF4-209ENST00000465132 IFIT1P09914 478 aaKnown RBP21.38■■□□□ 1.01
CPSF4-209ENST00000465132 TNNI2P48788 182 aa21.38■■□□□ 1.01
CPSF4-209ENST00000465132 CRHR2Q13324 411 aa21.38■■□□□ 1.01
CPSF4-209ENST00000465132 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.38■■□□□ 1.01
CPSF4-209ENST00000465132 ATG9AQ7Z3C6 839 aa21.38■■□□□ 1.01
CPSF4-209ENST00000465132 SLC5A1P13866 664 aa21.37■■□□□ 1.01
CPSF4-209ENST00000465132 CLASRPQ8N2M8 674 aaKnown RBP21.37■■□□□ 1.01
CPSF4-209ENST00000465132 ERO1AQ96HE7 468 aa21.37■■□□□ 1.01
CPSF4-209ENST00000465132 LRRCC1Q9C099 1032 aa21.37■■□□□ 1.01
CPSF4-209ENST00000465132 EXOC6BQ9Y2D4 811 aa21.37■■□□□ 1.01
CPSF4-209ENST00000465132 BCAMP50895 628 aa21.36■■□□□ 1.01
CPSF4-209ENST00000465132 PRPF38BQ5VTL8 546 aaKnown RBP21.36■■□□□ 1.01
CPSF4-209ENST00000465132 LPIN2Q92539 896 aa21.36■■□□□ 1.01
CPSF4-209ENST00000465132 TEKT1Q969V4 418 aa21.36■■□□□ 1.01
CPSF4-209ENST00000465132 CCDC136Q96JN2 1154 aa21.36■■□□□ 1.01
CPSF4-209ENST00000465132 MS4A4AQ96JQ5 239 aa21.36■■□□□ 1.01
CPSF4-209ENST00000465132 PPP4R2Q9NY27 417 aa21.36■■□□□ 1.01
CPSF4-209ENST00000465132 OTOFQ9HC10 1997 aa21.36■■□□□ 1.01
CPSF4-209ENST00000465132 MAP3K9P80192 1104 aa21.35■■□□□ 1.01
CPSF4-209ENST00000465132 VGLL4Q14135 290 aa21.35■■□□□ 1.01
CPSF4-209ENST00000465132 ATP2B3Q16720 1220 aa21.35■■□□□ 1.01
CPSF4-209ENST00000465132 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.35■■□□□ 1.01
CPSF4-209ENST00000465132 RHPN1Q8TCX5 695 aa21.35■■□□□ 1.01
CPSF4-209ENST00000465132 CD99L2Q8TCZ2 262 aa21.35■■□□□ 1.01
CPSF4-209ENST00000465132 CNKSR2Q8WXI2 1034 aa21.35■■□□□ 1.01
CPSF4-209ENST00000465132 MRIQ9BWK5 157 aa21.35■■□□□ 1.01
CPSF4-209ENST00000465132 FGFR2P21802 821 aa21.34■■□□□ 1.01
CPSF4-209ENST00000465132 CACNB3P54284 484 aa21.34■■□□□ 1.01
CPSF4-209ENST00000465132 TFCP2Q12800 502 aa21.34■■□□□ 1.01
CPSF4-209ENST00000465132 ZDHHC15Q96MV8 337 aa21.34■■□□□ 1.01
CPSF4-209ENST00000465132 CSADQ9Y600 493 aa21.34■■□□□ 1.01
CPSF4-209ENST00000465132 SP3Q02447 781 aa21.33■■□□□ 1.01
CPSF4-209ENST00000465132 BRI3BPQ8WY22 251 aa21.33■■□□□ 1.01
CPSF4-209ENST00000465132 PTPN22Q9Y2R2 807 aa21.33■■□□□ 1.01
CPSF4-209ENST00000465132 SUGT1Q9Y2Z0 365 aa21.33■■□□□ 1.01
CPSF4-209ENST00000465132 MAST3O60307 1309 aa21.32■■□□□ 1
CPSF4-209ENST00000465132 GTF2A2P52657 109 aa21.32■■□□□ 1
CPSF4-209ENST00000465132 GORABQ5T7V8 394 aa21.32■■□□□ 1
CPSF4-209ENST00000465132 APOBEC3HQ6NTF7 200 aaKnown RBP21.32■■□□□ 1
CPSF4-209ENST00000465132 CENPQQ7L2Z9 268 aaPredicted RBP21.32■■□□□ 1
CPSF4-209ENST00000465132 EFCC1Q9HA90 598 aa21.32■■□□□ 1
CPSF4-209ENST00000465132 GNL3LQ9NVN8 582 aaKnown RBP21.32■■□□□ 1
CPSF4-209ENST00000465132 TMOD2Q9NZR1 351 aa21.32■■□□□ 1
CPSF4-209ENST00000465132 CCL15-CCL14A0A0B4J2E2 113 aa21.31■■□□□ 1
CPSF4-209ENST00000465132 CCL15Q16663 113 aa21.31■■□□□ 1
CPSF4-209ENST00000465132 FKBP1CQ5VVH2 108 aa21.31■■□□□ 1
CPSF4-209ENST00000465132 FAM83AQ86UY5 434 aa21.31■■□□□ 1
CPSF4-209ENST00000465132 SMC5Q8IY18 1101 aa21.31■■□□□ 1
CPSF4-209ENST00000465132 OTUD5Q96G74 571 aa21.31■■□□□ 1
CPSF4-209ENST00000465132 SPDYE5A6NIY4 337 aa21.3■■□□□ 1
CPSF4-209ENST00000465132 APBB1O00213 710 aa21.3■■□□□ 1
CPSF4-209ENST00000465132 IFIT2P09913 472 aaKnown RBP21.3■■□□□ 1
CPSF4-209ENST00000465132 CAP1Q01518 475 aa21.3■■□□□ 1
CPSF4-209ENST00000465132 HHIPL2Q6UWX4 724 aa21.3■■□□□ 1
CPSF4-209ENST00000465132 GPATCH3Q96I76 525 aa21.3■■□□□ 1
CPSF4-209ENST00000465132 NEUROD6Q96NK8 337 aa21.3■■□□□ 1
CPSF4-209ENST00000465132 SNCAIPQ9Y6H5 919 aa21.3■■□□□ 1
CPSF4-209ENST00000465132 A0A1B0GUL7 405 aa21.29■■□□□ 1
CPSF4-209ENST00000465132 TAF1CQ15572 869 aaPredicted RBP21.29■■□□□ 1
CPSF4-209ENST00000465132 TNNI3KQ59H18 835 aa21.29■■□□□ 1
CPSF4-209ENST00000465132 FAM43AQ8N2R8 423 aa21.29■■□□□ 1
CPSF4-209ENST00000465132 HOOK2Q96ED9 719 aa21.29■■□□□ 1
CPSF4-209ENST00000465132 ZFYVE28Q9HCC9 887 aa21.29■■□□□ 1
CPSF4-209ENST00000465132 FPGT-TNNI3KV9GXZ4 949 aa21.29■■□□□ 1
CPSF4-209ENST00000465132 POTEFA5A3E0 1075 aa21.28■■□□□ 1
CPSF4-209ENST00000465132 CCDC158Q5M9N0 1113 aa21.28■■□□□ 1
CPSF4-209ENST00000465132 ANKRD45Q5TZF3 282 aa21.28■■□□□ 1
CPSF4-209ENST00000465132 WDR66Q8TBY9 1149 aa21.28■■□□□ 1
CPSF4-209ENST00000465132 ARMC5Q96C12 935 aa21.28■■□□□ 1
CPSF4-209ENST00000465132 WRNIP1Q96S55 665 aa21.28■■□□□ 1
CPSF4-209ENST00000465132 IGHDP01880 384 aa21.27■■□□□ 1
CPSF4-209ENST00000465132 AACSQ86V21 672 aa21.27■■□□□ 1
CPSF4-209ENST00000465132 ERO1BQ86YB8 467 aa21.27■■□□□ 1
CPSF4-209ENST00000465132 ZKSCAN4Q969J2 545 aaPredicted RBP21.27■■□□□ 1
CPSF4-209ENST00000465132 RPAP1Q9BWH6 1393 aaPredicted RBP21.26■□□□□ 0.99
CPSF4-209ENST00000465132 SEMA3EO15041 775 aa21.26■□□□□ 0.99
CPSF4-209ENST00000465132 CETPP11597 493 aa21.26■□□□□ 0.99
CPSF4-209ENST00000465132 DCAF15Q66K64 600 aa21.26■□□□□ 0.99
CPSF4-209ENST00000465132 UQCRFS1P1P0C7P4 283 aa21.25■□□□□ 0.99
CPSF4-209ENST00000465132 TIMM10P62072 90 aa21.25■□□□□ 0.99
CPSF4-209ENST00000465132 IL1RAPL2Q9NP60 686 aa21.25■□□□□ 0.99
CPSF4-209ENST00000465132 HTTP42858 3142 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms