RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 CBX8Q9HC52 389 aa6.92□□□□□ -1.3
CLK1-208ENST00000464454 TPSG1Q9NRR2 321 aa6.92□□□□□ -1.3
CLK1-208ENST00000464454 HIF3AQ9Y2N7 669 aa6.92□□□□□ -1.3
CLK1-208ENST00000464454 GAS2O43903 313 aaKnown RBP6.91□□□□□ -1.3
CLK1-208ENST00000464454 ECEL1O95672 775 aa6.91□□□□□ -1.3
CLK1-208ENST00000464454 SLFN14P0C7P3 912 aa6.91□□□□□ -1.3
CLK1-208ENST00000464454 LMNB1P20700 586 aa6.91□□□□□ -1.3
CLK1-208ENST00000464454 RPS26P62854 115 aaKnown RBP6.91□□□□□ -1.3
CLK1-208ENST00000464454 LLGL2Q6P1M3 1020 aa6.91□□□□□ -1.3
CLK1-208ENST00000464454 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.91□□□□□ -1.3
CLK1-208ENST00000464454 UTP4Q969X6 686 aaKnown RBP6.91□□□□□ -1.3
CLK1-208ENST00000464454 ZNF428Q96B54 188 aa6.91□□□□□ -1.3
CLK1-208ENST00000464454 FAM46AQ96IP4 442 aaKnown RBP6.91□□□□□ -1.3
CLK1-208ENST00000464454 E9PSI1 815 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 DHX15O43143 795 aaKnown RBP6.9□□□□□ -1.3
CLK1-208ENST00000464454 AOC2O75106 756 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 PAGE1O75459 146 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 TRIM37O94972 964 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 TIAF1O95411 115 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 CTSBP07858 339 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 BMP6P22004 513 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 VAMP1P23763 118 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 ZNF252P-AS1Q0IIN9 211 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 DOC2BQ14184 412 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 MAP1SQ66K74 1059 aaPredicted RBP6.9□□□□□ -1.3
CLK1-208ENST00000464454 DIEXFQ68CQ4 756 aaKnown RBP6.9□□□□□ -1.3
CLK1-208ENST00000464454 TTBK2Q6IQ55 1244 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 ACSBG1Q96GR2 724 aa6.9□□□□□ -1.3
CLK1-208ENST00000464454 UBL7Q96S82 380 aaPredicted RBP6.9□□□□□ -1.3
CLK1-208ENST00000464454 ZC3H12CQ9C0D7 883 aaKnown RBP6.9□□□□□ -1.3
CLK1-208ENST00000464454 CCDC86Q9H6F5 360 aaKnown RBP6.9□□□□□ -1.3
CLK1-208ENST00000464454 H2AFB1P0C5Y9 115 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 H2AFB2P0C5Z0 115 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 ADH5P11766 374 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 PREPP48147 710 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 SOX4Q06945 474 aaPredicted RBP6.89□□□□□ -1.31
CLK1-208ENST00000464454 PWP1Q13610 501 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 KIF4BQ2VIQ3 1234 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 AKAP4Q5JQC9 854 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 STK35Q8TDR2 534 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 MYRFLQ96LU7 910 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 WDR18Q9BV38 432 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 YIPF2Q9BWQ6 316 aa6.89□□□□□ -1.31
CLK1-208ENST00000464454 LIG3P49916 1009 aa6.88□□□□□ -1.31
CLK1-208ENST00000464454 AP4E1Q9UPM8 1137 aa6.88□□□□□ -1.31
CLK1-208ENST00000464454 ZNF862O60290 1169 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 LIG1P18858 919 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 USP11P51784 963 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 ID3Q02535 119 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 PRR23CQ6ZRP0 262 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 ARMC10Q8N2F6 343 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 ATXN3LQ9H3M9 355 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 CACNA2D2Q9NY47 1150 aa6.87□□□□□ -1.31
CLK1-208ENST00000464454 BMP3P12645 472 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 DRD2P14416 443 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 RSPO4Q2I0M5 234 aaPredicted RBP6.86□□□□□ -1.31
CLK1-208ENST00000464454 NKAPLQ5M9Q1 402 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 AGMOQ6ZNB7 445 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 DYMQ7RTS9 669 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 FAM20CQ8IXL6 584 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 TMEM87AQ8NBN3 555 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 C2CD4AQ8NCU7 369 aaPredicted RBP6.86□□□□□ -1.31
CLK1-208ENST00000464454 GRIN3AQ8TCU5 1115 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 GPBAR1Q8TDU6 330 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 MRRFQ96E11 262 aaKnown RBP6.86□□□□□ -1.31
CLK1-208ENST00000464454 RAXQ9Y2V3 346 aa6.86□□□□□ -1.31
CLK1-208ENST00000464454 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.85□□□□□ -1.31
CLK1-208ENST00000464454 TMPRSS2O15393 492 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 MAP3K11Q16584 847 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 HS2ST1Q7LGA3 356 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 RELL1Q8IUW5 271 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 Q8N3U1 123 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 WDR89Q96FK6 387 aaPredicted RBP6.85□□□□□ -1.31
CLK1-208ENST00000464454 RSRP1Q9BUV0 290 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 MIR1-1HGQ9H1L0 117 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 KCNF1Q9H3M0 494 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 GSX1Q9H4S2 264 aaPredicted RBP6.85□□□□□ -1.31
CLK1-208ENST00000464454 METTL5Q9NRN9 209 aaKnown RBP6.85□□□□□ -1.31
CLK1-208ENST00000464454 CRIM1Q9NZV1 1036 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 ACTL7BQ9Y614 415 aa6.85□□□□□ -1.31
CLK1-208ENST00000464454 UNCXA6NJT0 531 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 GSC2O15499 205 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 DYRK3O43781 588 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 FURINP09958 794 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 MAP4P27816 1152 aaKnown RBP6.84□□□□□ -1.31
CLK1-208ENST00000464454 RXRBP28702 533 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 ASPAP45381 313 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 ERVK-24P63145 666 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 TSNAXIP1Q2TAA8 658 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 RASIP1Q5U651 963 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 CLEC10AQ8IUN9 316 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 BACH2Q9BYV9 841 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 PIDD1Q9HB75 910 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 STOML1Q9UBI4 398 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 PPP1R9AQ9ULJ8 1098 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 PCDHA4Q9UN74 947 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 PCDHGC5Q9Y5F6 944 aa6.84□□□□□ -1.31
CLK1-208ENST00000464454 ZNF76P36508 570 aa6.83□□□□□ -1.32
CLK1-208ENST00000464454 MAP7Q14244 749 aa6.83□□□□□ -1.32
CLK1-208ENST00000464454 SGO2Q562F6 1265 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms