RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 IFT81Q8WYA0 676 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 GPT2Q8TD30 523 aa21.4■■□□□ 1.02
CCDC88B-204ENST00000463837 ARID5AQ03989 594 aa21.39■■□□□ 1.02
CCDC88B-204ENST00000463837 RNMTO43148 476 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 KRT13P13646 458 aa21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 PLCD1P51178 756 aa21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 SLC39A6Q13433 755 aa21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 MRFAP1L1Q96HT8 127 aa21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 IKBKGQ9Y6K9 419 aa21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 GAS2L3Q86XJ1 694 aa21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 ANTXR1Q9H6X2 564 aa21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 TRMT1LQ7Z2T5 733 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 ZNF622Q969S3 477 aaKnown RBP eCLIP21.39■■□□□ 1.012e-6■■■□□ 17.4
CCDC88B-204ENST00000463837 MTRF1LQ9UGC7 380 aaKnown RBP21.39■■□□□ 1.01
CCDC88B-204ENST00000463837 ZNF521Q96K83 1311 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 BRD3Q15059 726 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 PPM1EQ8WY54 764 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 SYNRGQ9UMZ2 1314 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 SYNMO15061 1565 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 GNA11P29992 359 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 HOXC9P31274 260 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 PNMA6EA0A0J9YXQ4 647 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 DTNBO60941 627 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 RXRAP19793 462 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 PAIP2Q9BPZ3 127 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 ANGEL1Q9UNK9 670 aaKnown RBP21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 MAP3K19Q56UN5 1328 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 CCDC174Q6PII3 467 aa21.38■■□□□ 1.01
CCDC88B-204ENST00000463837 SAMD15Q9P1V8 674 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 CCDC51Q96ER9 411 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 PPP2R5BQ15173 497 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 RPGRIP1Q96KN7 1286 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 FAM227BQ96M60 508 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 GBP6Q6ZN66 633 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 KBTBD3Q8NAB2 608 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 SELENOSQ9BQE4 189 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 CTNND2Q9UQB3 1225 aa21.37■■□□□ 1.01
CCDC88B-204ENST00000463837 CCDC6Q16204 474 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 VWA3BQ502W6 1294 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 MCM7P33993 719 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 PAXIP1Q6ZW49 1069 aaPredicted RBP21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 METTL22Q9BUU2 404 aaPredicted RBP21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 EYA2O00167 538 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 ACTN2P35609 894 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 ADALQ6DHV7 355 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 CCDC26Q8TAB7 109 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 HOMER2Q9NSB8 354 aa21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 OAS2P29728 719 aaKnown RBP21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 NAP1L4Q99733 375 aaKnown RBP21.36■■□□□ 1.01
CCDC88B-204ENST00000463837 APPBP2Q92624 585 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 CEP63Q96MT8 703 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 ATP2A1O14983 1001 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 IP6K1Q92551 441 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 IQCDQ96DY2 449 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 RRP36Q96EU6 259 aaKnown RBP21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 DCAF5Q96JK2 942 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 USP19O94966 1318 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 GOLGA6CA6NDK9 693 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 GOLGA6DP0CG33 693 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 CDC25BP30305 580 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 SETDB2Q96T68 719 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 DSCC1Q9BVC3 393 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 GOLGA6AQ9NYA3 693 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 ARHGEF10O15013 1369 aa21.35■■□□□ 1.01
CCDC88B-204ENST00000463837 NAP1L3Q99457 506 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 MTMR6Q9Y217 621 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 CCT6AP40227 531 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 ME3Q16798 604 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 MAGEB6Q8N7X4 407 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 JAKMIP2Q96AA8 810 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 MPHOSPH6Q99547 160 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 IQSEC3Q9UPP2 1182 aaPredicted RBP21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 TBC1D8BQ0IIM8 1120 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 C8orf74Q6P047 294 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 IFT20Q8IY31 132 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 NLRP3Q96P20 1036 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 SWAP70Q9UH65 585 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 SSH3Q8TE77 659 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 FERMT2Q96AC1 680 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 RSRC1Q96IZ7 334 aaKnown RBP21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 ZSWIM6Q9HCJ5 1215 aa21.34■■□□□ 1.01
CCDC88B-204ENST00000463837 PLCD3Q8N3E9 789 aa21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 NOC4LQ9BVI4 516 aaKnown RBP21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 NFE2L3Q9Y4A8 694 aa21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 PAK1Q13153 545 aa21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 CROCCP2Q86T23 111 aa21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 VWA3AA6NCI4 1184 aa21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 ARHGAP25P42331 645 aa21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 DDB1Q16531 1140 aa21.33■■□□□ 1.01
CCDC88B-204ENST00000463837 CCDC50Q8IVM0 306 aa21.33■■□□□ 1
CCDC88B-204ENST00000463837 XPO4Q9C0E2 1151 aaKnown RBP21.33■■□□□ 1
CCDC88B-204ENST00000463837 SMIM23A6NLE4 172 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 NDUFAB1O14561 156 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 POSTNQ15063 836 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 TSKSQ9UJT2 592 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 ARHGEF5Q12774 1597 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 TLDC2A0PJX2 215 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 PLBD2Q8NHP8 589 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 FERMT1Q9BQL6 677 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 KIAA1468Q9P260 1216 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms