RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MORC2Q9Y6X9 1032 aaPredicted RBP14.39□□□□□ -0.11
HDAC4-208ENST00000463007 PDIA3P30101 505 aaKnown RBP14.39□□□□□ -0.11
HDAC4-208ENST00000463007 CLCN6P51797 869 aa14.39□□□□□ -0.11
HDAC4-208ENST00000463007 UBXN4Q92575 508 aa14.39□□□□□ -0.11
HDAC4-208ENST00000463007 ORC3Q9UBD5 711 aaPredicted RBP14.39□□□□□ -0.11
HDAC4-208ENST00000463007 SALL1Q9NSC2 1324 aa14.39□□□□□ -0.11
HDAC4-208ENST00000463007 GOLGA8BA8MQT2 603 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 HSPD1P10809 573 aaKnown RBP14.38□□□□□ -0.11
HDAC4-208ENST00000463007 ADORA1P30542 326 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 CREBRFQ8IUR6 639 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 FAM89AQ96GI7 184 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 NOL10Q9BSC4 688 aaKnown RBP14.38□□□□□ -0.11
HDAC4-208ENST00000463007 DENND2AQ9ULE3 1009 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 KLF18A0A0U1RQI7 1052 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 M0R2C6 588 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 CTAGE5O15320 804 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 RNF113AO15541 343 aaKnown RBP14.38□□□□□ -0.11
HDAC4-208ENST00000463007 PFKFB2O60825 505 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 SCARF1Q14162 830 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 PI16Q6UXB8 463 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 SYNE4Q8N205 404 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 NEK11Q8NG66 645 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 DPF2Q92785 391 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 CARD6Q9BX69 1037 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 KIAA1468Q9P260 1216 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 MYH14Q7Z406 1995 aaKnown RBP14.38□□□□□ -0.11
HDAC4-208ENST00000463007 C4AP0C0L4 1744 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 C4BP0C0L5 1744 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 ZNF202O95125 648 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 APPP05067 770 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 AEBP2Q6ZN18 517 aaPredicted RBP14.38□□□□□ -0.11
HDAC4-208ENST00000463007 TTLL11Q8NHH1 800 aa14.38□□□□□ -0.11
HDAC4-208ENST00000463007 ZNF512BQ96KM6 892 aaPredicted RBP14.38□□□□□ -0.11
HDAC4-208ENST00000463007 NRDCO43847 1150 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 STARD3NLO95772 234 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 EVCP57679 992 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 ENGASEQ8NFI3 743 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 OSBP2Q969R2 916 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 XAGE2Q96GT9 111 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 SPTLC2O15270 562 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 IFIT1P09914 478 aaKnown RBP14.37□□□□□ -0.11
HDAC4-208ENST00000463007 TEX35Q5T0J7 233 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 KIF6Q6ZMV9 814 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 CLIC6Q96NY7 704 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 UBN2Q6ZU65 1347 aa14.37□□□□□ -0.11
HDAC4-208ENST00000463007 TMEM232C9JQI7 657 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 NEMFO60524 1076 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 FDPSP14324 419 aaKnown RBP14.36□□□□□ -0.11
HDAC4-208ENST00000463007 UBASH3AP57075 661 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 GABPB1Q06547 395 aaPredicted RBP14.36□□□□□ -0.11
HDAC4-208ENST00000463007 PNOCQ13519 176 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 SKIDA1Q1XH10 827 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 CCDC57Q2TAC2 916 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 FMR1NBQ8N0W7 255 aaPredicted RBP14.36□□□□□ -0.11
HDAC4-208ENST00000463007 UBE2Q2LH0YL09 131 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 FANCCQ00597 558 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 MYL10Q9BUA6 226 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 ZBTB1Q9Y2K1 713 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 COL4A1P02462 1669 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 HMGB1P09429 215 aaKnown RBP14.36□□□□□ -0.11
HDAC4-208ENST00000463007 SARM1Q6SZW1 724 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 PHKBQ93100 1093 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 CEP126Q9P2H0 1117 aa14.36□□□□□ -0.11
HDAC4-208ENST00000463007 CARMIL3Q8ND23 1372 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 KAT6BQ8WYB5 2073 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 ERVV-1B6SEH8 477 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 CDC25BP30305 580 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 CTSWP56202 376 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 CPLX3Q8WVH0 158 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 AKAP2Q9Y2D5 859 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 KIF28PB7ZC32 967 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 TPM4P67936 248 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 KARSQ15046 597 aaKnown RBP14.35□□□□□ -0.11
HDAC4-208ENST00000463007 ZNF827Q17R98 1081 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 ZNF34Q8IZ26 560 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 LLPHQ9BRT6 129 aaKnown RBP14.35□□□□□ -0.11
HDAC4-208ENST00000463007 DESI2Q9BSY9 194 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 GREM2Q9H772 168 aa14.35□□□□□ -0.11
HDAC4-208ENST00000463007 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.35□□□□□ -0.11
HDAC4-208ENST00000463007 CAVIN2O95810 425 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 GSDMDP57764 484 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 NAA16Q6N069 864 aaPredicted RBP14.34□□□□□ -0.11
HDAC4-208ENST00000463007 PLCD3Q8N3E9 789 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 LINC00301Q8NCQ3 95 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 ECM29Q5VYK3 1845 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 PFKFB1P16118 471 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 IL6STP40189 918 aaPredicted RBP14.34□□□□□ -0.11
HDAC4-208ENST00000463007 ADKP55263 362 aaKnown RBP14.34□□□□□ -0.11
HDAC4-208ENST00000463007 TMCO3Q6UWJ1 677 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 MICU3Q86XE3 530 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 INCENPQ9NQS7 918 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 GNG11P61952 73 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 BMS1Q14692 1282 aaKnown RBP14.34□□□□□ -0.11
HDAC4-208ENST00000463007 ADALQ6DHV7 355 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 RALYLQ86SE5 291 aaKnown RBP14.34□□□□□ -0.11
HDAC4-208ENST00000463007 BCL9LQ86UU0 1499 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 TIAM2Q8IVF5 1701 aa14.34□□□□□ -0.11
HDAC4-208ENST00000463007 TRMT44Q8IYL2 757 aaKnown RBP14.34□□□□□ -0.11
HDAC4-208ENST00000463007 PRC1O43663 620 aa14.33□□□□□ -0.12
HDAC4-208ENST00000463007 IFIT5Q13325 482 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms