RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 TSHZ3Q63HK5 1081 aa27.78■■■□□ 2.04
CCDC28B-203ENST00000461819 CDC42EP5Q6NZY7 148 aa27.78■■■□□ 2.04
CCDC28B-203ENST00000461819 FAM163AQ96GL9 167 aaPredicted RBP27.78■■■□□ 2.04
CCDC28B-203ENST00000461819 HAUS7Q99871 368 aa27.78■■■□□ 2.04
CCDC28B-203ENST00000461819 NOL10Q9BSC4 688 aaKnown RBP27.78■■■□□ 2.04
CCDC28B-203ENST00000461819 PAG1Q9NWQ8 432 aa27.78■■■□□ 2.04
CCDC28B-203ENST00000461819 AK9Q5TCS8 1911 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 TTC41PQ6P2S7 1318 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 IGSF3O75054 1194 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 NF2P35240 595 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 MAP3K12Q12852 859 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 RASA3Q14644 834 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 OTUD7AQ8TE49 926 aaPredicted RBP27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 LNPKQ9C0E8 428 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 USP40Q9NVE5 1235 aa27.77■■■□□ 2.04
CCDC28B-203ENST00000461819 MX1P20591 662 aa27.76■■■□□ 2.03
CCDC28B-203ENST00000461819 PAPPA2Q9BXP8 1791 aa27.76■■■□□ 2.03
CCDC28B-203ENST00000461819 ERC2O15083 957 aa27.75■■■□□ 2.03
CCDC28B-203ENST00000461819 EDC3Q96F86 508 aaKnown RBP27.75■■■□□ 2.03
CCDC28B-203ENST00000461819 GPR75-ASB3A0A0A6YYF3 556 aa27.74■■■□□ 2.03
CCDC28B-203ENST00000461819 FKBP1CQ5VVH2 108 aa27.74■■■□□ 2.03
CCDC28B-203ENST00000461819 MAGEB6Q8N7X4 407 aa27.74■■■□□ 2.03
CCDC28B-203ENST00000461819 C2orf69Q8N8R5 385 aa27.74■■■□□ 2.03
CCDC28B-203ENST00000461819 GBA2Q9HCG7 927 aaPredicted RBP27.74■■■□□ 2.03
CCDC28B-203ENST00000461819 CYP7A1P22680 504 aa27.73■■■□□ 2.03
CCDC28B-203ENST00000461819 NUCB1Q02818 461 aa27.73■■■□□ 2.03
CCDC28B-203ENST00000461819 CHD1LQ86WJ1 897 aa27.73■■■□□ 2.03
CCDC28B-203ENST00000461819 CDK5RAP2Q96SN8 1893 aa27.72■■■□□ 2.03
CCDC28B-203ENST00000461819 TMEM39BQ9GZU3 492 aa27.72■■■□□ 2.03
CCDC28B-203ENST00000461819 CNTNAP1P78357 1384 aa27.72■■■□□ 2.03
CCDC28B-203ENST00000461819 SALL3Q9BXA9 1300 aa27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 GLRX3O76003 335 aaKnown RBP27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 BAG3O95817 575 aa27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 TTLL12Q14166 644 aaPredicted RBP27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 SUPT20HL1Q3ZLR7 823 aa27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 TMED8Q6PL24 325 aaPredicted RBP27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 ADGRA1Q86SQ6 560 aa27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 FAM83AQ86UY5 434 aa27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 TLL2Q9Y6L7 1015 aa27.71■■■□□ 2.03
CCDC28B-203ENST00000461819 FOCADQ5VW36 1801 aa27.7■■■□□ 2.02
CCDC28B-203ENST00000461819 NFIAQ12857 509 aa27.7■■■□□ 2.02
CCDC28B-203ENST00000461819 SLC9C2Q5TAH2 1124 aa27.7■■■□□ 2.02
CCDC28B-203ENST00000461819 PI4K2BQ8TCG2 481 aa27.7■■■□□ 2.02
CCDC28B-203ENST00000461819 DDX24Q9GZR7 859 aaKnown RBP eCLIP27.7■■■□□ 2.02
CCDC28B-203ENST00000461819 AATFQ9NY61 560 aaKnown RBP eCLIP27.7■■■□□ 2.02
CCDC28B-203ENST00000461819 CEP350Q5VT06 3117 aa27.7■■■□□ 2.02
CCDC28B-203ENST00000461819 PDE6AP16499 860 aa27.69■■■□□ 2.02
CCDC28B-203ENST00000461819 TCP10Q12799 353 aa27.69■■■□□ 2.02
CCDC28B-203ENST00000461819 NBPF12Q5TAG4 269 aaPredicted RBP27.69■■■□□ 2.02
CCDC28B-203ENST00000461819 SAPCD2Q86UD0 394 aa27.69■■■□□ 2.02
CCDC28B-203ENST00000461819 MKRN1Q9UHC7 482 aaKnown RBP27.69■■■□□ 2.02
CCDC28B-203ENST00000461819 SSC5DA1L4H1 1573 aa27.69■■■□□ 2.02
CCDC28B-203ENST00000461819 MAP4K4O95819 1239 aaPredicted RBP27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 PLCG2P16885 1265 aa27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 HUNKP57058 714 aa27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 RHBDL3P58872 404 aa27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 FKBP1BP68106 108 aa27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 PRKG1Q13976 671 aa27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 PAXIP1Q6ZW49 1069 aaPredicted RBP27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 FAM151AQ8WW52 585 aa27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 RFX7Q2KHR2 1363 aa27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 RPAP1Q9BWH6 1393 aaPredicted RBP27.68■■■□□ 2.02
CCDC28B-203ENST00000461819 RGS3P49796 1198 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 PDE1AP54750 535 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 PICALMQ13492 652 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 DEFB115Q30KQ5 88 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 TEX11Q8IYF3 940 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 MIGA1Q8NAN2 632 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 SH3RF3Q8TEJ3 882 aaPredicted RBP27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 TEPSINQ96N21 525 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 IDI2Q9BXS1 227 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 FAM198AQ9UFP1 575 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 STAP2Q9UGK3 403 aa27.67■■■□□ 2.02
CCDC28B-203ENST00000461819 RASSF10A6NK89 507 aa27.66■■■□□ 2.02
CCDC28B-203ENST00000461819 WDHD1O75717 1129 aaPredicted RBP27.66■■■□□ 2.02
CCDC28B-203ENST00000461819 CDAN1Q8IWY9 1227 aa27.66■■■□□ 2.02
CCDC28B-203ENST00000461819 ZNF532Q9HCE3 1301 aa27.66■■■□□ 2.02
CCDC28B-203ENST00000461819 PPP4CP60510 307 aa27.65■■■□□ 2.02
CCDC28B-203ENST00000461819 ZSCAN25Q6NSZ9 544 aa27.65■■■□□ 2.02
CCDC28B-203ENST00000461819 MOB2Q70IA6 237 aa27.65■■■□□ 2.02
CCDC28B-203ENST00000461819 ARMC9Q7Z3E5 817 aa27.65■■■□□ 2.02
CCDC28B-203ENST00000461819 PPP1R12BO60237 982 aaPredicted RBP27.64■■■□□ 2.02
CCDC28B-203ENST00000461819 ENTPD3O75355 529 aa27.64■■■□□ 2.02
CCDC28B-203ENST00000461819 ADD2P35612 726 aa27.64■■■□□ 2.02
CCDC28B-203ENST00000461819 CERS3Q8IU89 383 aa27.64■■■□□ 2.02
CCDC28B-203ENST00000461819 KBTBD3Q8NAB2 608 aa27.64■■■□□ 2.02
CCDC28B-203ENST00000461819 HOOK2Q96ED9 719 aa27.64■■■□□ 2.02
CCDC28B-203ENST00000461819 ANGEL1Q9UNK9 670 aaKnown RBP27.64■■■□□ 2.02
CCDC28B-203ENST00000461819 OTOFQ9HC10 1997 aa27.64■■■□□ 2.01
CCDC28B-203ENST00000461819 DYNLL1P63167 89 aaKnown RBP27.63■■■□□ 2.01
CCDC28B-203ENST00000461819 GRM1Q13255 1194 aa27.63■■■□□ 2.01
CCDC28B-203ENST00000461819 ZSCAN29Q8IWY8 852 aaPredicted RBP27.63■■■□□ 2.01
CCDC28B-203ENST00000461819 KLRG1Q96E93 195 aa27.63■■■□□ 2.01
CCDC28B-203ENST00000461819 DDX4Q9NQI0 724 aaKnown RBP27.63■■■□□ 2.01
CCDC28B-203ENST00000461819 FZD1Q9UP38 647 aa27.63■■■□□ 2.01
CCDC28B-203ENST00000461819 MAGEB6P1A0A0J9YX57 407 aa27.62■■■□□ 2.01
CCDC28B-203ENST00000461819 TCRBV5S4A2TA0A5A2 114 aa27.62■■■□□ 2.01
CCDC28B-203ENST00000461819 UBE2Q2LH0YL09 131 aa27.62■■■□□ 2.01
CCDC28B-203ENST00000461819 DNAJC5GQ8N7S2 189 aa27.62■■■□□ 2.01
CCDC28B-203ENST00000461819 HHIPL1Q96JK4 782 aa27.62■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 168.1 ms