RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 STRCQ7RTU9 1775 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 BCL9O00512 1426 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 CTAGE15A4D2H0 777 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 ATP8B1O43520 1251 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 F13A1P00488 732 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 CTAGE8P0CG41 777 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 GJB2P29033 226 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 CTAGE6Q86UF2 777 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 CTAGE4Q8IX94 777 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 LMBRD1Q9NUN5 540 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 DNAI1Q9UI46 699 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 PARP3Q9Y6F1 533 aa7.08□□□□□ -1.28
VPS13D-202ENST00000460333 SALL3Q9BXA9 1300 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 LIG1P18858 919 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 TRAPPC3LQ5T215 181 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 B4GALNT4Q76KP1 1039 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 RUFY3Q7L099 469 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 SCN11AQ9UI33 1791 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 GNPATO15228 680 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 SLC3A2P08195 630 aaKnown RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 CCDC12Q8WUD4 166 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 NAA15Q9BXJ9 866 aaKnown RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 ANKRD2Q9GZV1 360 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 LSG1Q9H089 658 aaKnown RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 GDPD2Q9HCC8 539 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 CPSF2Q9P2I0 782 aaKnown RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 VIRMAQ69YN4 1812 aaKnown RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 CCDC69A6NI79 296 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 ZNF213O14771 459 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 RAD21O60216 631 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 MARCH6O60337 910 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 RSRC1Q96IZ7 334 aaKnown RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 SNRKQ9NRH2 765 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 VPS18Q9P253 973 aa7.07□□□□□ -1.28
VPS13D-202ENST00000460333 AHDC1Q5TGY3 1603 aaPredicted RBP7.07□□□□□ -1.28
VPS13D-202ENST00000460333 HSF2BPO75031 334 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 MAP2K2P36507 400 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 ST5P78524 1137 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 DNAJC21Q5F1R6 531 aaKnown RBP7.06□□□□□ -1.28
VPS13D-202ENST00000460333 SPECC1LQ69YQ0 1117 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 OTUD6BQ8N6M0 293 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 CLEC11AQ9Y240 323 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 ELP1O95163 1332 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 PAFAH1B1P43034 410 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 EIF5P55010 431 aaKnown RBP7.06□□□□□ -1.28
VPS13D-202ENST00000460333 LRRC24Q50LG9 513 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 FMNL3Q8IVF7 1028 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 MARCH10Q8NA82 808 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-202ENST00000460333 FAM227BQ96M60 508 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 DSCC1Q9BVC3 393 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 CEP131Q9UPN4 1083 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 ROBO1Q9Y6N7 1651 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 SLC27A2O14975 620 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 FAM196AQ6ZSG2 479 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 BANK1Q8NDB2 785 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 FLAD1Q8NFF5 587 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 GOLGA5Q8TBA6 731 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 GTF3C6Q969F1 213 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 PAIP2Q9BPZ3 127 aaKnown RBP7.06□□□□□ -1.28
VPS13D-202ENST00000460333 RAI14Q9P0K7 980 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 CNPY2Q9Y2B0 182 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 ABCC12Q96J65 1359 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 GNAT2P19087 354 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 RFX5P48382 616 aaPredicted RBP7.06□□□□□ -1.28
VPS13D-202ENST00000460333 RBM5P52756 815 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS13D-202ENST00000460333 STK3Q13188 491 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 FSIP1Q8NA03 581 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 TTLL11Q8NHH1 800 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 WASF1Q92558 559 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 APPBP2Q92624 585 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 TAF4BQ92750 862 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 MAP4K1Q92918 833 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 KAZALD1Q96I82 304 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 ANTXR1Q9H6X2 564 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 IMPACTQ9P2X3 320 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 COL18A1P39060 1754 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 NHSL1Q5SYE7 1610 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 PKD1L3Q7Z443 1732 aa7.06□□□□□ -1.28
VPS13D-202ENST00000460333 CLSTN1O94985 981 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 YEATS4O95619 227 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 AK2P54819 239 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 RBM6P78332 1123 aaKnown RBP7.05□□□□□ -1.28
VPS13D-202ENST00000460333 TTLL12Q14166 644 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-202ENST00000460333 HLFQ16534 295 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 ZSCAN26Q16670 478 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 BEGAINQ9BUH8 593 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 GREM2Q9H772 168 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 TLR7Q9NYK1 1049 aaKnown RBP7.05□□□□□ -1.28
VPS13D-202ENST00000460333 USO1O60763 962 aaKnown RBP7.05□□□□□ -1.28
VPS13D-202ENST00000460333 PDE8BO95263 885 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 CCDC175P0C221 793 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 SPA17Q15506 151 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 SPTY2D1Q68D10 685 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-202ENST00000460333 FERMT3Q86UX7 667 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 DRC1Q96MC2 740 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 NAPBQ9H115 298 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 RNF41Q9H4P4 317 aaPredicted RBP7.05□□□□□ -1.28
VPS13D-202ENST00000460333 CSF1RP07333 972 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 EPS15P42566 896 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 MAP2K1Q02750 393 aaPredicted RBP7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms