RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 MAP3K4Q9Y6R4 1608 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 BICDL2A1A5D9 508 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 SYCP3Q8IZU3 236 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 HAUS7Q99871 368 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 BAG1Q99933 345 aaPredicted RBP16.74■□□□□ 0.27
PTPRU-205ENST00000460170 LZTFL1Q9NQ48 299 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 COPRSQ9NQ92 184 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 ZNF532Q9HCE3 1301 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 TRAF1Q13077 416 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 GOLGA1Q92805 767 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 ZNF274Q96GC6 653 aaPredicted RBP16.74■□□□□ 0.27
PTPRU-205ENST00000460170 SEC62Q99442 399 aaKnown RBP16.74■□□□□ 0.27
PTPRU-205ENST00000460170 MMRN2Q9H8L6 949 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 CDCA7Q9BWT1 371 aaPredicted RBP16.73■□□□□ 0.27
PTPRU-205ENST00000460170 JAG2Q9Y219 1238 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 KRT86O43790 486 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 CNGA4Q8IV77 575 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 CNKSR2Q8WXI2 1034 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 PHKBQ93100 1093 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 V9GY48 417 aaPredicted RBP16.73■□□□□ 0.27
PTPRU-205ENST00000460170 TAF5LO75529 589 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 LMAN1P49257 510 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 PROSER3Q2NL68 480 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 MAP4K1Q92918 833 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 HECW2Q9P2P5 1572 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 PTCH1Q13635 1447 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 ERBB4Q15303 1308 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 FANCCQ00597 558 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 IFI16Q16666 785 aaKnown RBP16.73■□□□□ 0.27
PTPRU-205ENST00000460170 C17orf53Q8N3J3 647 aaPredicted RBP16.73■□□□□ 0.27
PTPRU-205ENST00000460170 MYL10Q9BUA6 226 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 ABCC3O15438 1527 aa16.73■□□□□ 0.27
PTPRU-205ENST00000460170 TACC1O75410 805 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 KIF5AQ12840 1032 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 SPATA5Q8NB90 893 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 CCDC42Q96M95 316 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 TNNI2P48788 182 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 CCDC94Q9BW85 323 aaPredicted RBP16.72■□□□□ 0.27
PTPRU-205ENST00000460170 LUC7L2Q9Y383 392 aaKnown RBP16.72■□□□□ 0.27
PTPRU-205ENST00000460170 MROH5Q6ZUA9 1318 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 CLTCL1P53675 1640 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 POLR2DO15514 142 aaKnown RBP16.72■□□□□ 0.27
PTPRU-205ENST00000460170 TOM1O60784 492 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 MCM6Q14566 821 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 CHAMP1Q96JM3 812 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 ZC3H12CQ9C0D7 883 aaKnown RBP16.72■□□□□ 0.27
PTPRU-205ENST00000460170 AKR1B15C9JRZ8 316 aaPredicted RBP16.72■□□□□ 0.27
PTPRU-205ENST00000460170 NLRP12P59046 1061 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 SPECC1Q5M775 1068 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 PPP4R3AQ6IN85 833 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 TTLL7Q6ZT98 887 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 PRDM1O75626 825 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 HIBADHP31937 336 aaKnown RBP16.72■□□□□ 0.27
PTPRU-205ENST00000460170 PPP2R5BQ15173 497 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 TRMT1LQ7Z2T5 733 aaKnown RBP16.72■□□□□ 0.27
PTPRU-205ENST00000460170 C8orf37Q96NL8 207 aa16.72■□□□□ 0.27
PTPRU-205ENST00000460170 FSD2A1L4K1 749 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 PRPF4BQ13523 1007 aaKnown RBP16.71■□□□□ 0.27
PTPRU-205ENST00000460170 CCDC113Q9H0I3 377 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 SAMM50Q9Y512 469 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 UNC13BO14795 1591 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 NLRP1Q9C000 1473 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 PFKFB2O60825 505 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 HSPD1P10809 573 aaKnown RBP16.71■□□□□ 0.27
PTPRU-205ENST00000460170 DESP17661 470 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 CALRP27797 417 aaKnown RBP16.71■□□□□ 0.27
PTPRU-205ENST00000460170 TERF1P54274 439 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 TUBB4BP68371 445 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 ARHGEF25Q86VW2 580 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 MLKLQ8NB16 471 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 ZHX1Q9UKY1 873 aaPredicted RBP16.71■□□□□ 0.27
PTPRU-205ENST00000460170 CTDSPL2Q05D32 466 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 CUL4AQ13619 759 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 ZNF569Q5MCW4 686 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 MYSM1Q5VVJ2 828 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 DRC1Q96MC2 740 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 GOPCQ9HD26 462 aa16.71■□□□□ 0.27
PTPRU-205ENST00000460170 ADCK5Q3MIX3 580 aa16.71■□□□□ 0.26
PTPRU-205ENST00000460170 DYDC1Q8WWB3 177 aa16.71■□□□□ 0.26
PTPRU-205ENST00000460170 PLIN2Q99541 437 aa16.71■□□□□ 0.26
PTPRU-205ENST00000460170 IMPACTQ9P2X3 320 aa16.71■□□□□ 0.26
PTPRU-205ENST00000460170 GUCA1BQ9UMX6 200 aa16.7■□□□□ 0.26
PTPRU-205ENST00000460170 CCDC87Q9NVE4 849 aa16.7■□□□□ 0.26
PTPRU-205ENST00000460170 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.7■□□□□ 0.26
PTPRU-205ENST00000460170 CCDC172P0C7W6 258 aa16.7■□□□□ 0.26
PTPRU-205ENST00000460170 ADALQ6DHV7 355 aa16.7■□□□□ 0.26
PTPRU-205ENST00000460170 ERO1AQ96HE7 468 aa16.7■□□□□ 0.26
PTPRU-205ENST00000460170 BCCIPQ9P287 314 aaKnown RBP eCLIP16.7■□□□□ 0.26
PTPRU-205ENST00000460170 TTC6Q86TZ1 520 aa16.7■□□□□ 0.26
PTPRU-205ENST00000460170 RIOK3O14730 519 aaKnown RBP16.69■□□□□ 0.26
PTPRU-205ENST00000460170 MYRIPQ8NFW9 859 aa16.69■□□□□ 0.26
PTPRU-205ENST00000460170 USP28Q96RU2 1077 aa16.69■□□□□ 0.26
PTPRU-205ENST00000460170 DBNLQ9UJU6 430 aaKnown RBP16.69■□□□□ 0.26
PTPRU-205ENST00000460170 CPSF1Q10570 1443 aaKnown RBP16.69■□□□□ 0.26
PTPRU-205ENST00000460170 PARP1P09874 1014 aaKnown RBP16.69■□□□□ 0.26
PTPRU-205ENST00000460170 GBP2P32456 591 aaPredicted RBP16.69■□□□□ 0.26
PTPRU-205ENST00000460170 PIK3AP1Q6ZUJ8 805 aa16.69■□□□□ 0.26
PTPRU-205ENST00000460170 IGSF22Q8N9C0 903 aa16.69■□□□□ 0.26
PTPRU-205ENST00000460170 TAOK3Q9H2K8 898 aa16.69■□□□□ 0.26
PTPRU-205ENST00000460170 GSTTP1A0A1W2PQM5 241 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms