RNA–Protein interactions for RNA: ENST00000455554.2

LINC02540-201, Transcript of long intergenic non-protein coding RNA 2540, humanhuman

TSL 3 BASIC

Gene LINC02540, Length 570 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02540-201ENST00000455554 TMEM40Q8WWA1 233 aa4.99□□□□□ -1.61
LINC02540-201ENST00000455554 CORO1BQ9BR76 489 aa4.99□□□□□ -1.61
LINC02540-201ENST00000455554 TRIM56Q9BRZ2 755 aaKnown RBP4.99□□□□□ -1.61
LINC02540-201ENST00000455554 ZFYVE28Q9HCC9 887 aa4.99□□□□□ -1.61
LINC02540-201ENST00000455554 MBNL3Q9NUK0 354 aaKnown RBP4.99□□□□□ -1.61
LINC02540-201ENST00000455554 DDX54Q8TDD1 881 aaKnown RBP4.98□□□□□ -1.61
LINC02540-201ENST00000455554 PBXIP1Q96AQ6 731 aa4.98□□□□□ -1.61
LINC02540-201ENST00000455554 SLC38A3Q99624 504 aa4.98□□□□□ -1.61
LINC02540-201ENST00000455554 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.98□□□□□ -1.61
LINC02540-201ENST00000455554 A0A1W2PP55 124 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 AOC2O75106 756 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 ZNF865P0CJ78 1059 aaPredicted RBP4.97□□□□□ -1.61
LINC02540-201ENST00000455554 GRIA4P48058 902 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 LRRN4CLQ8ND94 238 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 CCER1Q8TC90 406 aaPredicted RBP4.97□□□□□ -1.61
LINC02540-201ENST00000455554 TCF12Q99081 682 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 LIN7BQ9HAP6 207 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 VAV3Q9UKW4 847 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 PPP1R9AQ9ULJ8 1098 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 SYNGAP1Q96PV0 1343 aa4.97□□□□□ -1.61
LINC02540-201ENST00000455554 FAM13AO94988 1023 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 B3GALT4O96024 378 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 FAM87AP0C7U9 286 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 NPR3P17342 541 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 PRKCQQ04759 706 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 MESP2Q0VG99 397 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 CDK5R2Q13319 367 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 PDE3AQ14432 1141 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 PI4K2BQ8TCG2 481 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 WDR89Q96FK6 387 aaPredicted RBP4.96□□□□□ -1.62
LINC02540-201ENST00000455554 WDR18Q9BV38 432 aa4.96□□□□□ -1.62
LINC02540-201ENST00000455554 FZD6O60353 706 aa4.95□□□□□ -1.62
LINC02540-201ENST00000455554 KRTAP19-4Q3LI73 84 aa4.95□□□□□ -1.62
LINC02540-201ENST00000455554 GALNT12Q8IXK2 581 aa4.95□□□□□ -1.62
LINC02540-201ENST00000455554 GJD3Q8N144 294 aa4.95□□□□□ -1.62
LINC02540-201ENST00000455554 FAM84AQ96KN4 292 aa4.95□□□□□ -1.62
LINC02540-201ENST00000455554 RBAK-RBAKDNI3L0D1 243 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 LEFTY1O75610 366 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 AP3B2Q13367 1082 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 IFI16Q16666 785 aaKnown RBP4.94□□□□□ -1.62
LINC02540-201ENST00000455554 LCE5AQ5TCM9 118 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 BHLHE22Q8NFJ8 381 aaPredicted RBP4.94□□□□□ -1.62
LINC02540-201ENST00000455554 KRTAP17-1Q9BYP8 105 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 ZNF576Q9H609 170 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 PIDD1Q9HB75 910 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 MKNK2Q9HBH9 465 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 PRDM7Q9NQW5 492 aa4.94□□□□□ -1.62
LINC02540-201ENST00000455554 TMPRSS2O15393 492 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 AOC3Q16853 763 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 ARHGAP27Q6ZUM4 889 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 C1QL4Q86Z23 238 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 HRASLS5Q96KN8 279 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 ATXN3LQ9H3M9 355 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 CCDC87Q9NVE4 849 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 CRIM1Q9NZV1 1036 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 PLAGL2Q9UPG8 496 aa4.93□□□□□ -1.62
LINC02540-201ENST00000455554 TMEM265A0A087WTH1 108 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 LRRC10BA6NIK2 292 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.92□□□□□ -1.62
LINC02540-201ENST00000455554 CEACAM5P06731 702 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 LIG1P18858 919 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 ITPKAP23677 461 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 SF3B2Q13435 895 aaKnown RBP4.92□□□□□ -1.62
LINC02540-201ENST00000455554 ANGEL2Q5VTE6 544 aaKnown RBP4.92□□□□□ -1.62
LINC02540-201ENST00000455554 KIAA0319Q5VV43 1072 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 USPL1Q5W0Q7 1092 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 LCNL1Q6ZST4 164 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 SMYD4Q8IYR2 804 aaPredicted RBP4.92□□□□□ -1.62
LINC02540-201ENST00000455554 FLAD1Q8NFF5 587 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 FANCD2OSQ96PS1 177 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 FAM53CQ9NYF3 392 aa4.92□□□□□ -1.62
LINC02540-201ENST00000455554 ZNF503-AS2A6NEH8 195 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 SLFN14P0C7P3 912 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 CFPP27918 469 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 SSFA2P28290 1259 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 OXCT1P55809 520 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 ID3Q02535 119 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 SLC23A3Q6PIS1 610 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 ZSWIM9Q86XI8 627 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 KRTAP9-3Q9BYQ3 159 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 EHD4Q9H223 541 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 CCDC86Q9H6F5 360 aaKnown RBP4.91□□□□□ -1.62
LINC02540-201ENST00000455554 MTMR7Q9Y216 660 aa4.91□□□□□ -1.62
LINC02540-201ENST00000455554 RNGTTO60942 597 aaKnown RBP4.9□□□□□ -1.63
LINC02540-201ENST00000455554 RAP1GAPP47736 663 aa4.9□□□□□ -1.63
LINC02540-201ENST00000455554 HNRNPUQ00839 825 aaKnown RBP eCLIP4.9□□□□□ -1.63
LINC02540-201ENST00000455554 FKBP4Q02790 459 aaKnown RBP eCLIP4.9□□□□□ -1.63
LINC02540-201ENST00000455554 PTPN12Q05209 780 aaKnown RBP4.9□□□□□ -1.63
LINC02540-201ENST00000455554 CCDC97Q96F63 343 aaPredicted RBP4.9□□□□□ -1.63
LINC02540-201ENST00000455554 TOX2Q96NM4 488 aa4.9□□□□□ -1.63
LINC02540-201ENST00000455554 DUSP23Q9BVJ7 150 aa4.9□□□□□ -1.63
LINC02540-201ENST00000455554 ZC3H12CQ9C0D7 883 aaKnown RBP4.9□□□□□ -1.63
LINC02540-201ENST00000455554 DISC1Q9NRI5 854 aa4.9□□□□□ -1.63
LINC02540-201ENST00000455554 ZNF862O60290 1169 aa4.89□□□□□ -1.63
LINC02540-201ENST00000455554 ITIH2P19823 946 aa4.89□□□□□ -1.63
LINC02540-201ENST00000455554 TTLL4Q14679 1199 aa4.89□□□□□ -1.63
LINC02540-201ENST00000455554 KCNMB1Q16558 191 aa4.89□□□□□ -1.63
LINC02540-201ENST00000455554 MLANAQ16655 118 aa4.89□□□□□ -1.63
LINC02540-201ENST00000455554 KIF4BQ2VIQ3 1234 aa4.89□□□□□ -1.63
LINC02540-201ENST00000455554 RPS26P11Q5JNZ5 115 aaPredicted RBP4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms