RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SALL3Q9BXA9 1300 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 FOCADQ5VW36 1801 aa10.69□□□□□ -0.7
SYNE1-214ENST00000454018 USP17L3A6NCW0 530 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 USP17L4A6NCW7 530 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 TBC1D12O60347 775 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 TNIP1Q15025 636 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 STRIP1Q5VSL9 837 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 CIAPIN1Q6FI81 312 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 USP17L1Q7RTZ2 530 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 TBC1D22AQ8WUA7 517 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 BEGAINQ9BUH8 593 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 ECHDC1Q9NTX5 307 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 IQSEC3Q9UPP2 1182 aaPredicted RBP10.68□□□□□ -0.7
SYNE1-214ENST00000454018 ZNF541Q9H0D2 1346 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 ERC2O15083 957 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 ATP5JP18859 108 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 MCAMP43121 646 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 FKBP1AP62942 108 aaKnown RBP10.68□□□□□ -0.7
SYNE1-214ENST00000454018 GPC2Q8N158 579 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 WDR66Q8TBY9 1149 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 SALL1Q9NSC2 1324 aa10.68□□□□□ -0.7
SYNE1-214ENST00000454018 PSMD14O00487 310 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 RAD17O75943 681 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 GLRX3O76003 335 aaKnown RBP10.67□□□□□ -0.7
SYNE1-214ENST00000454018 GTF2IP78347 998 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 CXCL9Q07325 125 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 TTLL5Q6EMB2 1281 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 TMEM92Q6UXU6 159 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 ZGPATQ8N5A5 531 aaKnown RBP10.67□□□□□ -0.7
SYNE1-214ENST00000454018 SPATA5Q8NB90 893 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 OTUD7AQ8TE49 926 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-214ENST00000454018 FBXW7Q969H0 707 aa10.67□□□□□ -0.7
SYNE1-214ENST00000454018 POLR2AP24928 1970 aaKnown RBP10.67□□□□□ -0.7
SYNE1-214ENST00000454018 VIL1P09327 827 aaKnown RBP10.66□□□□□ -0.7
SYNE1-214ENST00000454018 RPS12P25398 132 aaKnown RBP10.66□□□□□ -0.7
SYNE1-214ENST00000454018 PDE1AP54750 535 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 CHAF1AQ13111 956 aaPredicted RBP10.66□□□□□ -0.7
SYNE1-214ENST00000454018 SCARF1Q14162 830 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 MFSD14BQ5SR56 506 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 DACT2Q5SW24 774 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 AGBL3Q8NEM8 1001 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 OSBPL3Q9H4L5 887 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 PLSCR2Q9NRY7 297 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 HMG20BQ9P0W2 317 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 STAP2Q9UGK3 403 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 SUGT1Q9Y2Z0 365 aa10.66□□□□□ -0.7
SYNE1-214ENST00000454018 MAST3O60307 1309 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 GLTPD2A6NH11 291 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 IGSF3O75054 1194 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 RSBN1LQ6PCB5 846 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-214ENST00000454018 PI16Q6UXB8 463 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 PLEKHM2Q8IWE5 1019 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 C16orf71Q8IYS4 520 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-214ENST00000454018 PI4K2BQ8TCG2 481 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 HAUS7Q99871 368 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 KCNQ5Q9NR82 932 aa10.65□□□□□ -0.7
SYNE1-214ENST00000454018 MMP14P50281 582 aa10.64□□□□□ -0.71
SYNE1-214ENST00000454018 IRX5P78411 483 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-214ENST00000454018 TTF1Q15361 905 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-214ENST00000454018 TSHZ3Q63HK5 1081 aa10.64□□□□□ -0.71
SYNE1-214ENST00000454018 SPTY2D1Q68D10 685 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-214ENST00000454018 L3MBTL3Q96JM7 780 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-214ENST00000454018 DNAJC2Q99543 621 aaKnown RBP10.64□□□□□ -0.71
SYNE1-214ENST00000454018 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.64□□□□□ -0.71
SYNE1-214ENST00000454018 JAG2Q9Y219 1238 aa10.64□□□□□ -0.71
SYNE1-214ENST00000454018 GJA3Q9Y6H8 435 aa10.64□□□□□ -0.71
SYNE1-214ENST00000454018 NAV1Q8NEY1 1877 aa10.64□□□□□ -0.71
SYNE1-214ENST00000454018 SPDYE5A6NIY4 337 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 ZAP70P43403 619 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 CERS5Q8N5B7 392 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 DPF2Q92785 391 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 GMLQ99445 158 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 BOLA2Q9H3K6 86 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 SNRKQ9NRH2 765 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 PAG1Q9NWQ8 432 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 RFX7Q2KHR2 1363 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 MYH1P12882 1939 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 DDNO94850 711 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-214ENST00000454018 CYP2E1P05181 493 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-214ENST00000454018 LDHBP07195 334 aaKnown RBP10.63□□□□□ -0.71
SYNE1-214ENST00000454018 LMOD1P29536 600 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-214ENST00000454018 GMPSP49915 693 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-214ENST00000454018 TMED8Q6PL24 325 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-214ENST00000454018 RETREG2Q8NC44 543 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 ABCF2Q9UG63 623 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 HDAC9Q9UKV0 1011 aa10.63□□□□□ -0.71
SYNE1-214ENST00000454018 MYH8P13535 1937 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 IQCA1LA6NCM1 817 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 GOLIM4O00461 696 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 USP17L8P0C7I0 530 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 PRDX5P30044 214 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 SCNN1DP51172 638 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 MYSM1Q5VVJ2 828 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 DZIP1Q86YF9 867 aaKnown RBP10.62□□□□□ -0.71
SYNE1-214ENST00000454018 KIAA0825Q8IV33 1275 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 OGFOD1Q8N543 542 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 NLRP7Q8WX94 980 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 MXD3Q9BW11 206 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 OCEL1Q9H607 264 aa10.62□□□□□ -0.71
SYNE1-214ENST00000454018 FAM217BQ9NTX9 383 aaPredicted RBP10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms