RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	RREB1	Q92766	1687 aa		19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	SUSD4	Q5VX71	490 aa		19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	SGMS1	Q86VZ5	419 aa		19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	ERCC4	Q92889	916 aa	Predicted RBP	19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	ALG1	Q9BT22	464 aa		19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	SENP2	Q9HC62	589 aa		19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	19.68	■□□□□ 0.74
TOM1-210	ENST00000449058	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	19.67	■□□□□ 0.74
TOM1-210	ENST00000449058	PATL2	C9JE40	543 aa	Known RBP	19.67	■□□□□ 0.74
TOM1-210	ENST00000449058	CDC27	P30260	824 aa		19.67	■□□□□ 0.74
TOM1-210	ENST00000449058	RASGRF1	Q13972	1273 aa		19.67	■□□□□ 0.74
TOM1-210	ENST00000449058	LY9	Q9HBG7	655 aa		19.67	■□□□□ 0.74
TOM1-210	ENST00000449058	LAMB2	P55268	1798 aa		19.67	■□□□□ 0.74
TOM1-210	ENST00000449058	CMA1	P23946	247 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	SLC39A14	Q15043	492 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	NTRK3	Q16288	839 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	AIFM3	Q96NN9	605 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	BPIFA3	Q9BQP9	254 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	BCOR	Q6W2J9	1755 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	INTS5	Q6P9B9	1019 aa	Known RBP	19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	CPLX2	Q6PUV4	134 aa	Known RBP	19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	IFNL3	Q8IZI9	196 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	AOPEP	Q8N6M6	819 aa		19.66	■□□□□ 0.74
TOM1-210	ENST00000449058	ZBTB43	O43298	467 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	LIFR	P42702	1097 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	MAP3K12	Q12852	859 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	CHAF1A	Q13111	956 aa	Predicted RBP	19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	GLIPR1L2	Q4G1C9	344 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	KRT40	Q6A162	431 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	FAM217B	Q9NTX9	383 aa	Predicted RBP	19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	ZNF202	O95125	648 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	MBD4	O95243	580 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	RXRA	P19793	462 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	VPS37D	Q86XT2	251 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	LRRC8A	Q8IWT6	810 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	MAGEB6	Q8N7X4	407 aa		19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	CIC	Q96RK0	1608 aa	Predicted RBP	19.65	■□□□□ 0.74
TOM1-210	ENST00000449058	NEMF	O60524	1076 aa		19.64	■□□□□ 0.74
TOM1-210	ENST00000449058	PFKFB1	P16118	471 aa		19.64	■□□□□ 0.74
TOM1-210	ENST00000449058	MICU3	Q86XE3	530 aa		19.64	■□□□□ 0.74
TOM1-210	ENST00000449058	CCDC87	Q9NVE4	849 aa		19.64	■□□□□ 0.74
TOM1-210	ENST00000449058	NID2	Q14112	1375 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	RTL9	Q8NET4	1388 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	WDHD1	O75717	1129 aa	Predicted RBP	19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	DPCR1	Q3MIW9	517 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	TMEM67	Q5HYA8	995 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	PHKB	Q93100	1093 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	UTP14A	Q9BVJ6	771 aa	Known RBP	19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	NAPB	Q9H115	298 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	TACC3	Q9Y6A5	838 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	MROH7-TTC4	A0A0A0MT08	1334 aa		19.64	■□□□□ 0.73
TOM1-210	ENST00000449058	RANBP6	O60518	1105 aa	Known RBP	19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	RBM6	P78332	1123 aa	Known RBP	19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	MPHOSPH8	Q99549	860 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	INCENP	Q9NQS7	918 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	SEC31B	Q9NQW1	1179 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	ZSWIM5	Q9P217	1185 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	STK36	Q9NRP7	1315 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	GOLGA8A	A7E2F4	631 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	GSG1L2	A8MUP6	293 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	SNAP23	O00161	211 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	RIOK3	O14730	519 aa	Known RBP	19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	PPP6R2	O75170	966 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	SLC3A2	P08195	630 aa	Known RBP	19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	U2AF2	P26368	475 aa	Known RBP eCLIP	19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	IARS	P41252	1262 aa	Known RBP	19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	PTPA	Q15257	358 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	ZNF710	Q8N1W2	664 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	TSC1	Q92574	1164 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	TIGD1	Q96MW7	591 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	CNNM2	Q9H8M5	875 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	ARMT1	Q9H993	441 aa		19.63	■□□□□ 0.73
TOM1-210	ENST00000449058	CTDSPL2	Q05D32	466 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	NFXL1	Q6ZNB6	911 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	PNPLA7	Q6ZV29	1317 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	FAM237A	A0A1B0GTK4	181 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	CAMTA2	O94983	1202 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	CRKL	P46109	303 aa	Known RBP	19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	NLRP12	P59046	1061 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	PARP10	Q53GL7	1025 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	AKNAD1	Q5T1N1	836 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	MAP3K14	Q99558	947 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	HPSE	Q9Y251	543 aa		19.62	■□□□□ 0.73
TOM1-210	ENST00000449058	KRT23	Q9C075	422 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	MYH14	Q7Z406	1995 aa	Known RBP	19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	AHDC1	Q5TGY3	1603 aa	Predicted RBP	19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	ROBO1	Q9Y6N7	1651 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	GNAT2	P19087	354 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	ARID5B	Q14865	1188 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	ZRSR1	Q15695	479 aa	Known RBP	19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	CCDC152	Q4G0S7	254 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	FBXW7	Q969H0	707 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	MYL10	Q9BUA6	226 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	SLC12A7	Q9Y666	1083 aa		19.61	■□□□□ 0.73
TOM1-210	ENST00000449058	BCL9L	Q86UU0	1499 aa		19.6	■□□□□ 0.73
TOM1-210	ENST00000449058	IFIT3	O14879	490 aa	Known RBP	19.6	■□□□□ 0.73
TOM1-210	ENST00000449058	MARCKS	P29966	332 aa	Predicted RBP	19.6	■□□□□ 0.73
TOM1-210	ENST00000449058	JMY	Q8N9B5	988 aa		19.6	■□□□□ 0.73
TOM1-210	ENST00000449058	CDCA7	Q9BWT1	371 aa	Predicted RBP	19.6	■□□□□ 0.73
TOM1-210	ENST00000449058	CTIF	O43310	598 aa	Known RBP	19.59	■□□□□ 0.73

Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms