RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 RAB17Q9H0T7 212 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 RABEP2Q9H5N1 569 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 USP47Q96K76 1375 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 NPR1P16066 1061 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 SCRIBQ14160 1630 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 PPP2R3AQ06190 1150 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 GLE1Q53GS7 698 aaKnown RBP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 C16orf87Q6PH81 154 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 KIF1BPQ96EK5 621 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 RIPOR2Q9Y4F9 1068 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 GNGT2O14610 69 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 MCF2L2Q86YR7 1114 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 EEF1B2P24534 225 aaKnown RBP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 CALML3P27482 149 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 MRPL28Q13084 256 aaKnown RBP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 TRIM14Q14142 442 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 RBM26Q5T8P6 1007 aaKnown RBP9.94□□□□□ -0.82
NIPBL-202ENST00000448238 TSKSQ9UJT2 592 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 STK38LQ9Y2H1 464 aa9.94□□□□□ -0.82
NIPBL-202ENST00000448238 IFIT1P09914 478 aaKnown RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 SNCBQ16143 134 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 HDDC2Q7Z4H3 204 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 GDAP1L1Q96MZ0 367 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 TRIM56Q9BRZ2 755 aaKnown RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 TTLL12Q14166 644 aaPredicted RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 IPO11Q9UI26 975 aaKnown RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 SRGAP3O43295 1099 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 SPOPO43791 374 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 RANBP1P43487 201 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 PAK2Q13177 524 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 CASC4Q6P4E1 433 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 TMTC2Q8N394 836 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 IFIT3O14879 490 aaKnown RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 WDR44Q5JSH3 913 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 FERMT3Q86UX7 667 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 CNTLNQ9NXG0 1405 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 RANBP6O60518 1105 aaKnown RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 HMOX1P09601 288 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 OCM2P0CE71 109 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 OCMP0CE72 109 aaPredicted RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 IARSP41252 1262 aaKnown RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 MRPS15P82914 257 aaKnown RBP9.93□□□□□ -0.82
NIPBL-202ENST00000448238 ARHGAP44Q17R89 818 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 SFMBT1Q9UHJ3 866 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 GUCA1BQ9UMX6 200 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 BIN1O00499 593 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 NLRP9Q7RTR0 991 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 SYCE1Q8N0S2 351 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 ATP6V1E2Q96A05 226 aa9.93□□□□□ -0.82
NIPBL-202ENST00000448238 RAB3GAP2Q9H2M9 1393 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 BAG3O95817 575 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 RBM27Q9P2N5 1060 aaKnown RBP9.92□□□□□ -0.82
NIPBL-202ENST00000448238 SLC13A4Q9UKG4 626 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 PRDM1O75626 825 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 CFAP61Q8NHU2 1237 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 FAM200AQ8TCP9 573 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 KRT23Q9C075 422 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 CCDC18Q5T9S5 1454 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 HLA-DOAP06340 250 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 RHOXF2BP0C7M4 288 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 ERO1AQ96HE7 468 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 RHOXF2Q9BQY4 288 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 ZKSCAN3Q9BRR0 538 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 FAM177BA6PVY3 158 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 TMEM232C9JQI7 657 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 GNAQP50148 359 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 ARHGDIAP52565 204 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 TWISTNBQ3B726 338 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-202ENST00000448238 CYP26C1Q6V0L0 522 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 STX19Q8N4C7 294 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 MRFAP1Q9Y605 127 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 GUCY1B3Q02153 619 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 TRIM6Q9C030 488 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-202ENST00000448238 TBCCQ15814 346 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 RPAP2Q8IXW5 612 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-202ENST00000448238 TPCN1Q9ULQ1 816 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 GPRASP1Q5JY77 1395 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 CCDC78A2IDD5 438 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 GOLGA8RI6L899 631 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 SERPINB2P05120 415 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 KRT10P13645 584 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 STX2P32856 288 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 LRRC8BQ6P9F7 803 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 KIAA2013Q8IYS2 634 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 NR1H4Q96RI1 486 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-202ENST00000448238 CABP5Q9NP86 173 aa9.92□□□□□ -0.82
NIPBL-202ENST00000448238 BRD4O60885 1362 aaPredicted RBP9.91□□□□□ -0.82
NIPBL-202ENST00000448238 L3MBTL2Q969R5 705 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 TACO1Q9BSH4 297 aaKnown RBP9.91□□□□□ -0.82
NIPBL-202ENST00000448238 NFKBIL1Q9UBC1 381 aaPredicted RBP9.91□□□□□ -0.82
NIPBL-202ENST00000448238 SART1O43290 800 aaKnown RBP9.91□□□□□ -0.82
NIPBL-202ENST00000448238 CREB3O43889 395 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 C4BPBP20851 252 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 ARID5AQ03989 594 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 RNF34Q969K3 372 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 HMG20BQ9P0W2 317 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 DCDC2Q9UHG0 476 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 HYOU1Q9Y4L1 999 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 KRT87PA6NCN2 255 aa9.91□□□□□ -0.82
NIPBL-202ENST00000448238 FLOT1O75955 427 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms