RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 UTRNP46939 3433 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 PLCG2P16885 1265 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 MCMDC2Q4G0Z9 681 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 CWC27Q6UX04 472 aaKnown RBP18.99■□□□□ 0.63
USP40-206ENST00000443711 MIGA1Q8NAN2 632 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 AIDAQ96BJ3 306 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 FAM227BQ96M60 508 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 PUS7LQ9H0K6 701 aaKnown RBP18.99■□□□□ 0.63
USP40-206ENST00000443711 RRAGCQ9HB90 399 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 AATFQ9NY61 560 aaKnown RBP eCLIP18.99■□□□□ 0.63
USP40-206ENST00000443711 PCDHAC2Q9Y5I4 1007 aa18.99■□□□□ 0.63
USP40-206ENST00000443711 WNT10BO00744 389 aa18.98■□□□□ 0.63
USP40-206ENST00000443711 MYO1BO43795 1136 aa18.98■□□□□ 0.63
USP40-206ENST00000443711 EGFRP00533 1210 aa18.98■□□□□ 0.63
USP40-206ENST00000443711 USP50Q70EL3 339 aaPredicted RBP18.98■□□□□ 0.63
USP40-206ENST00000443711 PNMA8AQ86V59 439 aaPredicted RBP18.98■□□□□ 0.63
USP40-206ENST00000443711 TRPM4Q8TD43 1214 aa18.98■□□□□ 0.63
USP40-206ENST00000443711 ZNF526Q8TF50 670 aaPredicted RBP18.98■□□□□ 0.63
USP40-206ENST00000443711 TAF1DQ9H5J8 278 aaPredicted RBP18.98■□□□□ 0.63
USP40-206ENST00000443711 USP40Q9NVE5 1235 aa18.98■□□□□ 0.63
USP40-206ENST00000443711 ECM29Q5VYK3 1845 aa18.97■□□□□ 0.63
USP40-206ENST00000443711 A0A0D9SFI3 127 aa18.97■□□□□ 0.63
USP40-206ENST00000443711 MBD4O95243 580 aa18.97■□□□□ 0.63
USP40-206ENST00000443711 MFAP1P55081 439 aaKnown RBP18.97■□□□□ 0.63
USP40-206ENST00000443711 DYNLL1P63167 89 aaKnown RBP18.97■□□□□ 0.63
USP40-206ENST00000443711 NBPF9Q3BBW0 867 aa18.97■□□□□ 0.63
USP40-206ENST00000443711 CDC42EP5Q6NZY7 148 aa18.97■□□□□ 0.63
USP40-206ENST00000443711 SEC62Q99442 399 aaKnown RBP18.97■□□□□ 0.63
USP40-206ENST00000443711 RIOK1Q9BRS2 568 aaKnown RBP18.97■□□□□ 0.63
USP40-206ENST00000443711 TDRD3Q9H7E2 651 aaKnown RBP18.97■□□□□ 0.63
USP40-206ENST00000443711 M0R2C6 588 aa18.96■□□□□ 0.63
USP40-206ENST00000443711 HIRAP54198 1017 aaPredicted RBP18.96■□□□□ 0.63
USP40-206ENST00000443711 SH3RF3Q8TEJ3 882 aaPredicted RBP18.96■□□□□ 0.63
USP40-206ENST00000443711 STRBPQ96SI9 672 aaKnown RBP18.96■□□□□ 0.63
USP40-206ENST00000443711 ARMT1Q9H993 441 aa18.96■□□□□ 0.63
USP40-206ENST00000443711 TMOD2Q9NZR1 351 aa18.96■□□□□ 0.63
USP40-206ENST00000443711 ZNF70Q9UC06 446 aaPredicted RBP18.96■□□□□ 0.63
USP40-206ENST00000443711 RAD50Q92878 1312 aa18.96■□□□□ 0.63
USP40-206ENST00000443711 GPAA1O43292 621 aa18.95■□□□□ 0.62
USP40-206ENST00000443711 RHBDL3P58872 404 aa18.95■□□□□ 0.62
USP40-206ENST00000443711 SPDYE2Q495Y8 402 aa18.95■□□□□ 0.62
USP40-206ENST00000443711 TEX11Q8IYF3 940 aa18.95■□□□□ 0.62
USP40-206ENST00000443711 LCORLQ8N3X6 602 aa18.95■□□□□ 0.62
USP40-206ENST00000443711 CRNKL1Q9BZJ0 848 aaKnown RBP18.95■□□□□ 0.62
USP40-206ENST00000443711 NMRK2Q9NPI5 230 aa18.95■□□□□ 0.62
USP40-206ENST00000443711 GNAT2P19087 354 aa18.94■□□□□ 0.62
USP40-206ENST00000443711 YY1P25490 414 aa18.94■□□□□ 0.62
USP40-206ENST00000443711 ESYT1Q9BSJ8 1104 aa18.94■□□□□ 0.62
USP40-206ENST00000443711 GPBP1L1Q9HC44 474 aaPredicted RBP18.94■□□□□ 0.62
USP40-206ENST00000443711 CLRN2A0PK11 232 aa18.93■□□□□ 0.62
USP40-206ENST00000443711 SGSM2O43147 1006 aa18.93■□□□□ 0.62
USP40-206ENST00000443711 EAPPQ56P03 285 aaPredicted RBP18.93■□□□□ 0.62
USP40-206ENST00000443711 FKBP1CQ5VVH2 108 aa18.93■□□□□ 0.62
USP40-206ENST00000443711 CCDC129Q6ZRS4 1044 aa18.93■□□□□ 0.62
USP40-206ENST00000443711 ZC3H15Q8WU90 426 aaKnown RBP18.93■□□□□ 0.62
USP40-206ENST00000443711 SLC4A4Q9Y6R1 1079 aa18.93■□□□□ 0.62
USP40-206ENST00000443711 POLR2AP24928 1970 aaKnown RBP18.93■□□□□ 0.62
USP40-206ENST00000443711 CCDC171Q6TFL3 1326 aa18.93■□□□□ 0.62
USP40-206ENST00000443711 CDK5RAP2Q96SN8 1893 aa18.92■□□□□ 0.62
USP40-206ENST00000443711 USP5P45974 858 aa18.92■□□□□ 0.62
USP40-206ENST00000443711 ZNF589Q86UQ0 364 aaPredicted RBP18.92■□□□□ 0.62
USP40-206ENST00000443711 IDI2Q9BXS1 227 aa18.92■□□□□ 0.62
USP40-206ENST00000443711 VEZTQ9HBM0 779 aa18.92■□□□□ 0.62
USP40-206ENST00000443711 PATL2C9JE40 543 aaKnown RBP18.91■□□□□ 0.62
USP40-206ENST00000443711 WDHD1O75717 1129 aaPredicted RBP18.91■□□□□ 0.62
USP40-206ENST00000443711 ANGEL2Q5VTE6 544 aaKnown RBP18.91■□□□□ 0.62
USP40-206ENST00000443711 APOBEC3FQ8IUX4 373 aaKnown RBP18.91■□□□□ 0.62
USP40-206ENST00000443711 TGFBRAP1Q8WUH2 860 aa18.91■□□□□ 0.62
USP40-206ENST00000443711 DCPSQ96C86 337 aaKnown RBP18.91■□□□□ 0.62
USP40-206ENST00000443711 GGA3Q9NZ52 723 aa18.91■□□□□ 0.62
USP40-206ENST00000443711 PGAP2Q9UHJ9 254 aa18.91■□□□□ 0.62
USP40-206ENST00000443711 CLEC11AQ9Y240 323 aa18.91■□□□□ 0.62
USP40-206ENST00000443711 ASTN2O75129 1339 aaPredicted RBP18.91■□□□□ 0.62
USP40-206ENST00000443711 PITPNM2Q9BZ72 1349 aa18.91■□□□□ 0.62
USP40-206ENST00000443711 RPAP1Q9BWH6 1393 aaPredicted RBP18.91■□□□□ 0.62
USP40-206ENST00000443711 FOCADQ5VW36 1801 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 PRKAB2O43741 272 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 NPM3O75607 178 aaKnown RBP18.9■□□□□ 0.62
USP40-206ENST00000443711 APPP05067 770 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 TNNI2P48788 182 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 CACNB3P54284 484 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 TNFAIP1Q13829 316 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 KIAA1211Q6ZU35 1233 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 DDRGK1Q96HY6 314 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 IL25Q9H293 177 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 ATP8A2Q9NTI2 1148 aa18.9■□□□□ 0.62
USP40-206ENST00000443711 GSG1L2A8MUP6 293 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 TCP10L2B9ZVM9 353 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 EIF5BO60841 1220 aaKnown RBP18.89■□□□□ 0.61
USP40-206ENST00000443711 ENTPD3O75355 529 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 PICALMQ13492 652 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 GIMAP6Q6P9H5 292 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 FAM83AQ86UY5 434 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 MAPKAPK5Q8IW41 473 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 SDR42E1Q8WUS8 393 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 NACAP1Q9BZK3 213 aa18.89■□□□□ 0.61
USP40-206ENST00000443711 MYH1P12882 1939 aa18.88■□□□□ 0.61
USP40-206ENST00000443711 HSPD1P10809 573 aaKnown RBP18.88■□□□□ 0.61
USP40-206ENST00000443711 NFIAQ12857 509 aa18.88■□□□□ 0.61
USP40-206ENST00000443711 LDHDQ86WU2 507 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms