RNA–Protein interactions for RNA: ENST00000439886.5

SMPD4-209, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 3,371 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-209ENST00000439886 ALG1Q9BT22 464 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 FPGT-TNNI3KV9GXZ4 949 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 KIDINS220Q9ULH0 1771 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 A0A0U1RQJ8 604 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 PRC1O43663 620 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 AFMP43652 599 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 LIG3P49916 1009 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 NCAPHQ15003 741 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 TTC19Q6DKK2 380 aaPredicted RBP13.34□□□□□ -0.27
SMPD4-209ENST00000439886 COPS6Q7L5N1 327 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 VSTM4Q8IW00 320 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 NFATC2IPQ8NCF5 419 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 ATRIPQ8WXE1 791 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 FAM204AQ9H8W3 233 aa13.34□□□□□ -0.27
SMPD4-209ENST00000439886 IFIT1P09914 478 aaKnown RBP13.33□□□□□ -0.28
SMPD4-209ENST00000439886 ILDR1Q86SU0 546 aaPredicted RBP13.33□□□□□ -0.28
SMPD4-209ENST00000439886 PRPF38AQ8NAV1 312 aaKnown RBP13.33□□□□□ -0.28
SMPD4-209ENST00000439886 SMARCC2Q8TAQ2 1214 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 XAGE3Q8WTP9 111 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 CDC5LQ99459 802 aaKnown RBP13.33□□□□□ -0.28
SMPD4-209ENST00000439886 CDC42BPGQ6DT37 1551 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 ALKQ9UM73 1620 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 ARHGEF10O15013 1369 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 CTAGE15A4D2H0 777 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 GOLGA6L9A6NEM1 432 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 CTAGE8P0CG41 777 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 MUM1L1Q5H9M0 696 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 CTAGE6Q86UF2 777 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 CTAGE4Q8IX94 777 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 MYL10Q9BUA6 226 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 MRFAP1Q9Y605 127 aa13.33□□□□□ -0.28
SMPD4-209ENST00000439886 NEURL4Q96JN8 1562 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 A0A087WZG4 1122 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 PSME1Q06323 249 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 CPLX2Q6PUV4 134 aaKnown RBP13.32□□□□□ -0.28
SMPD4-209ENST00000439886 SAMSN1Q9NSI8 373 aaKnown RBP13.32□□□□□ -0.28
SMPD4-209ENST00000439886 KIF28PB7ZC32 967 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 MAP3K9P80192 1104 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 RRP12Q5JTH9 1297 aaKnown RBP13.32□□□□□ -0.28
SMPD4-209ENST00000439886 MRPL44Q9H9J2 332 aaKnown RBP13.32□□□□□ -0.28
SMPD4-209ENST00000439886 PRDM16Q9HAZ2 1276 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 PAG1Q9NWQ8 432 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 CTAGE9A4FU28 777 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 CCT6AP40227 531 aaKnown RBP13.32□□□□□ -0.28
SMPD4-209ENST00000439886 SPECC1LQ69YQ0 1117 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 GUCA1BQ9UMX6 200 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 IGSF1Q8N6C5 1336 aa13.32□□□□□ -0.28
SMPD4-209ENST00000439886 CCDC151A5D8V7 595 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 IMMTQ16891 758 aaKnown RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 SRGAP1Q7Z6B7 1085 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 RIN2Q8WYP3 895 aaPredicted RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 STAMQ92783 540 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 PNKPQ96T60 521 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 NPHP4O75161 1426 aaPredicted RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 A0A1W2PQ27 194 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 A0A1W2PQ64 194 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 A0A1W2PQD8 194 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 ATP8B1O43520 1251 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 FDPSP14324 419 aaKnown RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 PDE4BQ07343 736 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 NBPF6Q5VWK0 638 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 LMBR1LQ6UX01 489 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 PACS2Q86VP3 889 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 SLC35F6Q8N357 371 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 IGSF22Q8N9C0 903 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 NBPF4Q96M43 638 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 CRACR2AQ9BSW2 395 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 KCNH3Q9ULD8 1083 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 USP42Q9H9J4 1324 aaKnown RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 TTC36A6NLP5 189 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 POLR2DO15514 142 aaKnown RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 HSPD1P10809 573 aaKnown RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 BRD3Q15059 726 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 NBPF9Q3BBW0 867 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 PLEKHO1Q53GL0 409 aaPredicted RBP13.31□□□□□ -0.28
SMPD4-209ENST00000439886 ACRBPQ8NEB7 543 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 CENPHQ9H3R5 247 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 MED4Q9NPJ6 270 aa13.31□□□□□ -0.28
SMPD4-209ENST00000439886 SBNO1A3KN83 1393 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 LMTK2Q8IWU2 1503 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 AKR1B15C9JRZ8 316 aaPredicted RBP13.3□□□□□ -0.28
SMPD4-209ENST00000439886 ENC1O14682 589 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 CMA1P23946 247 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 MATR3P43243 847 aaKnown RBP eCLIP13.3□□□□□ -0.28
SMPD4-209ENST00000439886 VSNL1P62760 191 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 CASP8Q14790 479 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 ATL3Q6DD88 541 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 NCAPH2Q6IBW4 605 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 GPIHBP1Q8IV16 184 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 CEP112Q8N8E3 955 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 NUP88Q99567 741 aaPredicted RBP13.3□□□□□ -0.28
SMPD4-209ENST00000439886 YEATS4O95619 227 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 ATP5JP18859 108 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 VPS37DQ86XT2 251 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 ZNF594Q96JF6 807 aaPredicted RBP13.3□□□□□ -0.28
SMPD4-209ENST00000439886 MROH7-TTC4A0A0A0MT08 1334 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 PIK3C2BO00750 1634 aa13.3□□□□□ -0.28
SMPD4-209ENST00000439886 KAZALD1Q96I82 304 aa13.29□□□□□ -0.28
SMPD4-209ENST00000439886 PPP1R12AO14974 1030 aaPredicted RBP13.29□□□□□ -0.28
SMPD4-209ENST00000439886 CUTAO60888 179 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms