RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 DSCC1Q9BVC3 393 aa15.21■□□□□ 0.03
SCLT1-202ENST00000439369 BACH2Q9BYV9 841 aa15.21■□□□□ 0.03
SCLT1-202ENST00000439369 CRNKL1Q9BZJ0 848 aaKnown RBP15.21■□□□□ 0.03
SCLT1-202ENST00000439369 CNOT7Q9UIV1 285 aaKnown RBP15.21■□□□□ 0.03
SCLT1-202ENST00000439369 ZMYM6O95789 1325 aa15.2■□□□□ 0.02
SCLT1-202ENST00000439369 SPDYE2BA6NHP3 402 aa15.2■□□□□ 0.02
SCLT1-202ENST00000439369 NPM3O75607 178 aaKnown RBP15.2■□□□□ 0.02
SCLT1-202ENST00000439369 DDNO94850 711 aaPredicted RBP15.2■□□□□ 0.02
SCLT1-202ENST00000439369 SPDYE6P0CI01 402 aa15.2■□□□□ 0.02
SCLT1-202ENST00000439369 LMOD1P29536 600 aaPredicted RBP15.2■□□□□ 0.02
SCLT1-202ENST00000439369 CFAP100Q494V2 611 aa15.2■□□□□ 0.02
SCLT1-202ENST00000439369 SLFNL1Q499Z3 407 aa15.2■□□□□ 0.02
SCLT1-202ENST00000439369 APOBEC3HQ6NTF7 200 aaKnown RBP15.2■□□□□ 0.02
SCLT1-202ENST00000439369 ZNF589Q86UQ0 364 aaPredicted RBP15.2■□□□□ 0.02
SCLT1-202ENST00000439369 MIGA1Q8NAN2 632 aa15.2■□□□□ 0.02
SCLT1-202ENST00000439369 MYOZ2Q9NPC6 264 aa15.2■□□□□ 0.02
SCLT1-202ENST00000439369 RBM5P52756 815 aaKnown RBP eCLIP15.19■□□□□ 0.02
SCLT1-202ENST00000439369 RHBDL3P58872 404 aa15.19■□□□□ 0.02
SCLT1-202ENST00000439369 ALX1Q15699 326 aa15.19■□□□□ 0.02
SCLT1-202ENST00000439369 FKBP1CQ5VVH2 108 aa15.19■□□□□ 0.02
SCLT1-202ENST00000439369 LCORLQ8N3X6 602 aa15.19■□□□□ 0.02
SCLT1-202ENST00000439369 ARMT1Q9H993 441 aa15.19■□□□□ 0.02
SCLT1-202ENST00000439369 ATP8A2Q9NTI2 1148 aa15.19■□□□□ 0.02
SCLT1-202ENST00000439369 AATFQ9NY61 560 aaKnown RBP eCLIP15.19■□□□□ 0.02
SCLT1-202ENST00000439369 WDR90Q96KV7 1748 aa15.19■□□□□ 0.02
SCLT1-202ENST00000439369 IQCA1LA6NCM1 817 aa15.18■□□□□ 0.02
SCLT1-202ENST00000439369 PATL2C9JE40 543 aaKnown RBP15.18■□□□□ 0.02
SCLT1-202ENST00000439369 MYO1BO43795 1136 aa15.18■□□□□ 0.02
SCLT1-202ENST00000439369 DYNLL1P63167 89 aaKnown RBP15.18■□□□□ 0.02
SCLT1-202ENST00000439369 DDRGK1Q96HY6 314 aa15.18■□□□□ 0.02
SCLT1-202ENST00000439369 NACAP1Q9BZK3 213 aa15.18■□□□□ 0.02
SCLT1-202ENST00000439369 LSG1Q9H089 658 aaKnown RBP15.18■□□□□ 0.02
SCLT1-202ENST00000439369 IL25Q9H293 177 aa15.18■□□□□ 0.02
SCLT1-202ENST00000439369 UPF2Q9HAU5 1272 aaKnown RBP15.18■□□□□ 0.02
SCLT1-202ENST00000439369 ANO2Q9NQ90 1003 aa15.18■□□□□ 0.02
SCLT1-202ENST00000439369 ADARB2Q9NS39 739 aaKnown RBP15.18■□□□□ 0.02
SCLT1-202ENST00000439369 U3KPZ7 1027 aaPredicted RBP15.18■□□□□ 0.02
SCLT1-202ENST00000439369 HSPD1P10809 573 aaKnown RBP15.17■□□□□ 0.02
SCLT1-202ENST00000439369 KIF4BQ2VIQ3 1234 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 CDC42EP5Q6NZY7 148 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 CCDC129Q6ZRS4 1044 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 TEX11Q8IYF3 940 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 SH3RF3Q8TEJ3 882 aaPredicted RBP15.17■□□□□ 0.02
SCLT1-202ENST00000439369 MAP4K1Q92918 833 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 PRMT6Q96LA8 375 aaPredicted RBP15.17■□□□□ 0.02
SCLT1-202ENST00000439369 IDI2Q9BXS1 227 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 USP40Q9NVE5 1235 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 TMOD2Q9NZR1 351 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 CTNNA3Q9UI47 895 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 HACL1Q9UJ83 578 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 SLC4A4Q9Y6R1 1079 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 SCN4AP35499 1836 aa15.17■□□□□ 0.02
SCLT1-202ENST00000439369 ADAMTSL1Q8N6G6 1762 aa15.16■□□□□ 0.02
SCLT1-202ENST00000439369 COL2A1P02458 1487 aaPredicted RBP15.16■□□□□ 0.02
SCLT1-202ENST00000439369 GSG1L2A8MUP6 293 aa15.16■□□□□ 0.02
SCLT1-202ENST00000439369 SPDYE2Q495Y8 402 aa15.16■□□□□ 0.02
SCLT1-202ENST00000439369 USP50Q70EL3 339 aaPredicted RBP15.16■□□□□ 0.02
SCLT1-202ENST00000439369 TAOK2Q9UL54 1235 aa15.16■□□□□ 0.02
SCLT1-202ENST00000439369 WNT10BO00744 389 aa15.15■□□□□ 0.02
SCLT1-202ENST00000439369 FOXP2O15409 715 aa15.15■□□□□ 0.02
SCLT1-202ENST00000439369 ENTPD3O75355 529 aa15.15■□□□□ 0.02
SCLT1-202ENST00000439369 WDHD1O75717 1129 aaPredicted RBP15.15■□□□□ 0.02
SCLT1-202ENST00000439369 EPS15P42566 896 aa15.15■□□□□ 0.02
SCLT1-202ENST00000439369 USP26Q9BXU7 913 aa15.15■□□□□ 0.02
SCLT1-202ENST00000439369 MKRN1Q9UHC7 482 aaKnown RBP15.15■□□□□ 0.02
SCLT1-202ENST00000439369 ECM29Q5VYK3 1845 aa15.15■□□□□ 0.02
SCLT1-202ENST00000439369 PITPNM2Q9BZ72 1349 aa15.15■□□□□ 0.02
SCLT1-202ENST00000439369 SRCAPQ6ZRS2 3230 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 APPP05067 770 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 MCCP23508 829 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 USP5P45974 858 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 PTH1RQ03431 593 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 TNFAIP1Q13829 316 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 SBK1Q52WX2 424 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 VPS53Q5VIR6 699 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 FAM83AQ86UY5 434 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 IFNL3Q8IZI9 196 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 ZC3H15Q8WU90 426 aaKnown RBP15.14■□□□□ 0.01
SCLT1-202ENST00000439369 NAPBQ9H115 298 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 TDRD3Q9H7E2 651 aaKnown RBP15.14■□□□□ 0.01
SCLT1-202ENST00000439369 DCP1AQ9NPI6 582 aaPredicted RBP15.14■□□□□ 0.01
SCLT1-202ENST00000439369 ARPP21Q9UBL0 812 aaPredicted RBP15.14■□□□□ 0.01
SCLT1-202ENST00000439369 ZNF70Q9UC06 446 aaPredicted RBP15.14■□□□□ 0.01
SCLT1-202ENST00000439369 FOCADQ5VW36 1801 aa15.14■□□□□ 0.01
SCLT1-202ENST00000439369 SHTN1A0MZ66 631 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 PRKAB2O43741 272 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 SEC24BO95487 1268 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 FGAP02671 866 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 EPHX2P34913 555 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 TDO2P48775 406 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 TBC1D10BQ4KMP7 808 aaPredicted RBP15.13■□□□□ 0.01
SCLT1-202ENST00000439369 RNF20Q5VTR2 975 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 SAMD7Q7Z3H4 446 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 PNMA8AQ86V59 439 aaPredicted RBP15.13■□□□□ 0.01
SCLT1-202ENST00000439369 APOBEC3FQ8IUX4 373 aaKnown RBP15.13■□□□□ 0.01
SCLT1-202ENST00000439369 AMOTL1Q8IY63 956 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 TGFBRAP1Q8WUH2 860 aa15.13■□□□□ 0.01
SCLT1-202ENST00000439369 DHX36Q9H2U1 1008 aaKnown RBP15.13■□□□□ 0.01
SCLT1-202ENST00000439369 EPB41L4AQ9HCS5 686 aaPredicted RBP15.13■□□□□ 0.01
SCLT1-202ENST00000439369 RBM8AQ9Y5S9 174 aaKnown RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms