RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 SAMSN1Q9NSI8 373 aaKnown RBP13.21□□□□□ -0.29
HMGCS1-202ENST00000433297 ATP5J2-PTCD1G3V325 749 aa13.21□□□□□ -0.29
HMGCS1-202ENST00000433297 PTCD1O75127 700 aaKnown RBP13.21□□□□□ -0.29
HMGCS1-202ENST00000433297 C1orf141Q5JVX7 400 aa13.21□□□□□ -0.29
HMGCS1-202ENST00000433297 BRAPQ7Z569 592 aa13.21□□□□□ -0.29
HMGCS1-202ENST00000433297 CEP112Q8N8E3 955 aa13.21□□□□□ -0.29
HMGCS1-202ENST00000433297 HAUS7Q99871 368 aa13.21□□□□□ -0.29
HMGCS1-202ENST00000433297 KIF23Q02241 960 aaPredicted RBP13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 SLC39A14Q15043 492 aa13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 LRRC31Q6UY01 552 aa13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 METTL16Q86W50 562 aaKnown RBP13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 C19orf44Q9H6X5 657 aa13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 PAG1Q9NWQ8 432 aa13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 TUBE1Q9UJT0 475 aa13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 CDC23Q9UJX2 597 aa13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 L1RE1Q9UN81 338 aa13.21□□□□□ -0.3
HMGCS1-202ENST00000433297 SETD1AO15047 1707 aaKnown RBP13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 PRC1O43663 620 aa13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 FKBP4Q02790 459 aaKnown RBP eCLIP13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 PPFIBP1Q86W92 1011 aa13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 CDC5LQ99459 802 aaKnown RBP13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 ITSN1Q15811 1721 aa13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 SLC39A6Q13433 755 aa13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 GRAMD1CQ8IYS0 662 aa13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 PPM1EQ8WY54 764 aa13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 KCNH3Q9ULD8 1083 aa13.2□□□□□ -0.3
HMGCS1-202ENST00000433297 BMP6P22004 513 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 STX17P56962 302 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 PTPN12Q05209 780 aaKnown RBP13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 FMR1Q06787 632 aaKnown RBP eCLIP13.19□□□□□ -0.32e-7■■■□□ 15.9
HMGCS1-202ENST00000433297 COPS6Q7L5N1 327 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 JMYQ8N9B5 988 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 ALG1Q9BT22 464 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 SPATA31D1Q6ZQQ2 1576 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 JCADQ9P266 1359 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 CTAGE15A4D2H0 777 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 CTAGE9A4FU28 777 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 AKR1B15C9JRZ8 316 aaPredicted RBP13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 CTAGE8P0CG41 777 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 GCKRQ14397 625 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 RAD9BQ6WBX8 426 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 CTAGE6Q86UF2 777 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 VPS37DQ86XT2 251 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 CTAGE4Q8IX94 777 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 SLC35F6Q8N357 371 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 IQUBQ8NA54 791 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 XAGE3Q8WTP9 111 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 PHKBQ93100 1093 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 HINFPQ9BQA5 517 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 RAI14Q9P0K7 980 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 CHD2O14647 1828 aaKnown RBP13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 TEX33O43247 280 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 RALYLQ86SE5 291 aaKnown RBP13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 SIRT1Q96EB6 747 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 RGPD1P0DJD0 1748 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 CRYBG1Q9Y4K1 1723 aa13.19□□□□□ -0.3
HMGCS1-202ENST00000433297 RIMBP3CA6NJZ7 1639 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 RIMBP3BA6NNM3 1639 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 RIMBP3Q9UFD9 1639 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 NEURL1BA8MQ27 555 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 RIN2Q8WYP3 895 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 DSCC1Q9BVC3 393 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 HOOK1Q9UJC3 728 aaKnown RBP13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 LRRIQ3A6PVS8 624 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 ABL1P00519 1130 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 GUCY2CP25092 1073 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 RBL2Q08999 1139 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.18□□□□□ -0.32e-6■□□□□ 10.7
HMGCS1-202ENST00000433297 TBX2Q13207 712 aaPredicted RBP13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 IGSF22Q8N9C0 903 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 AGXT2Q9BYV1 514 aa13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 MKRN1Q9UHC7 482 aaKnown RBP13.18□□□□□ -0.3
HMGCS1-202ENST00000433297 POTEB2H3BUK9 544 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 COBLO75128 1261 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 RNF40O75150 1001 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 NCAPH2Q6IBW4 605 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 ACRBPQ8NEB7 543 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 ACBD3Q9H3P7 528 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 ADGRG1Q9Y653 693 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 ZMYND10O75800 440 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 NOA1Q8NC60 698 aaKnown RBP13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 FAM71BQ8TC56 605 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 HNRNPLLQ8WVV9 542 aaKnown RBP13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 HELLSQ9NRZ9 838 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 MAST3O60307 1309 aa13.17□□□□□ -0.3
HMGCS1-202ENST00000433297 M0R2C6 588 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 POLR2DO15514 142 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 IFIT1P09914 478 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 PRR29P0C7W0 189 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 LIG3P49916 1009 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 CORO7P57737 925 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 IMMTQ16891 758 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 PLEKHO1Q53GL0 409 aaPredicted RBP13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 KRT40Q6A162 431 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 DDX21Q9NR30 783 aaKnown RBP eCLIP13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 MAN1B1Q9UKM7 699 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 CEMIPQ8WUJ3 1361 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 A0A087WZG4 1122 aa13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 RNMTO43148 476 aaKnown RBP13.16□□□□□ -0.3
HMGCS1-202ENST00000433297 DNAJC21Q5F1R6 531 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms