RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 SEZ6L2Q6UXD5 910 aa9.78□□□□□ -0.84
LINC01040-201ENST00000425048 FLCNQ8NFG4 579 aa9.78□□□□□ -0.84
LINC01040-201ENST00000425048 DNAJC25Q9H1X3 360 aa9.78□□□□□ -0.84
LINC01040-201ENST00000425048 C1GALT1Q9NS00 363 aa9.78□□□□□ -0.84
LINC01040-201ENST00000425048 CCDC74AQ96AQ1 378 aa9.77□□□□□ -0.85
LINC01040-201ENST00000425048 ASIC4Q96FT7 647 aa9.77□□□□□ -0.85
LINC01040-201ENST00000425048 WDR18Q9BV38 432 aa9.77□□□□□ -0.85
LINC01040-201ENST00000425048 PPP1R9AQ9ULJ8 1098 aa9.77□□□□□ -0.85
LINC01040-201ENST00000425048 DAGLAQ9Y4D2 1042 aa9.77□□□□□ -0.85
LINC01040-201ENST00000425048 TMC1Q8TDI8 760 aa9.76□□□□□ -0.85
LINC01040-201ENST00000425048 PAK6Q9NQU5 681 aaPredicted RBP9.76□□□□□ -0.85
LINC01040-201ENST00000425048 TMEM238LA0A1B0GVL6 79 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 EIF1AYO14602 144 aaKnown RBP9.75□□□□□ -0.85
LINC01040-201ENST00000425048 DYNC1LI2O43237 492 aaPredicted RBP9.75□□□□□ -0.85
LINC01040-201ENST00000425048 GADD45BO75293 160 aaPredicted RBP9.75□□□□□ -0.85
LINC01040-201ENST00000425048 SLFN14P0C7P3 912 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 COL19A1Q14993 1142 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 CYP27C1Q4G0S4 372 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 NIF3L1Q9GZT8 377 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 LGR6Q9HBX8 967 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 ABCB6Q9NP58 842 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 TRAK1Q9UPV9 953 aa9.75□□□□□ -0.85
LINC01040-201ENST00000425048 JUNBP17275 347 aaPredicted RBP9.74□□□□□ -0.85
LINC01040-201ENST00000425048 PRPF40BQ6NWY9 871 aaKnown RBP9.74□□□□□ -0.85
LINC01040-201ENST00000425048 LIG1P18858 919 aa9.73□□□□□ -0.85
LINC01040-201ENST00000425048 SLC5A6Q9Y289 635 aa9.73□□□□□ -0.85
LINC01040-201ENST00000425048 ZNF157P51786 506 aaPredicted RBP9.72□□□□□ -0.85
LINC01040-201ENST00000425048 HNRNPUQ00839 825 aaKnown RBP eCLIP9.72□□□□□ -0.85
LINC01040-201ENST00000425048 STK11IPQ8N1F8 1099 aa9.72□□□□□ -0.85
LINC01040-201ENST00000425048 ATXN3LQ9H3M9 355 aa9.72□□□□□ -0.85
LINC01040-201ENST00000425048 PIDD1Q9HB75 910 aa9.72□□□□□ -0.85
LINC01040-201ENST00000425048 PPP4R2Q9NY27 417 aa9.72□□□□□ -0.85
LINC01040-201ENST00000425048 CRIM1Q9NZV1 1036 aa9.72□□□□□ -0.85
LINC01040-201ENST00000425048 TMPRSS2O15393 492 aa9.71□□□□□ -0.86
LINC01040-201ENST00000425048 ITGB5P18084 799 aa9.71□□□□□ -0.86
LINC01040-201ENST00000425048 FZD5Q13467 585 aa9.71□□□□□ -0.86
LINC01040-201ENST00000425048 BCL7CQ8WUZ0 217 aaPredicted RBP9.71□□□□□ -0.86
LINC01040-201ENST00000425048 ZC3H12CQ9C0D7 883 aaKnown RBP9.71□□□□□ -0.86
LINC01040-201ENST00000425048 CCDC86Q9H6F5 360 aaKnown RBP9.71□□□□□ -0.86
LINC01040-201ENST00000425048 ID3Q02535 119 aa9.7□□□□□ -0.86
LINC01040-201ENST00000425048 FAAP100Q0VG06 881 aa9.7□□□□□ -0.86
LINC01040-201ENST00000425048 OGFOD2Q6N063 350 aa9.7□□□□□ -0.86
LINC01040-201ENST00000425048 TXNDC2Q86VQ3 553 aa9.7□□□□□ -0.86
LINC01040-201ENST00000425048 WDR89Q96FK6 387 aaPredicted RBP9.7□□□□□ -0.86
LINC01040-201ENST00000425048 CSRNP1Q96S65 589 aa9.7□□□□□ -0.86
LINC01040-201ENST00000425048 GPR182O15218 404 aa9.69□□□□□ -0.86
LINC01040-201ENST00000425048 IGHA2P01877 340 aa9.69□□□□□ -0.86
LINC01040-201ENST00000425048 GRM2Q14416 872 aa9.69□□□□□ -0.86
LINC01040-201ENST00000425048 GLIS3Q8NEA6 775 aa9.69□□□□□ -0.86
LINC01040-201ENST00000425048 DMRTB1Q96MA1 342 aa9.69□□□□□ -0.86
LINC01040-201ENST00000425048 FANCD2OSQ96PS1 177 aa9.69□□□□□ -0.86
LINC01040-201ENST00000425048 KRT82Q9NSB4 513 aa9.69□□□□□ -0.86
LINC01040-201ENST00000425048 ZNF862O60290 1169 aa9.68□□□□□ -0.86
LINC01040-201ENST00000425048 GSTP1P09211 210 aaKnown RBP9.68□□□□□ -0.86
LINC01040-201ENST00000425048 PPP2R3AQ06190 1150 aa9.68□□□□□ -0.86
LINC01040-201ENST00000425048 DTHD1Q6ZMT9 781 aa9.68□□□□□ -0.86
LINC01040-201ENST00000425048 SMYD4Q8IYR2 804 aaPredicted RBP9.68□□□□□ -0.86
LINC01040-201ENST00000425048 EPS8L3Q8TE67 593 aaKnown RBP9.68□□□□□ -0.86
LINC01040-201ENST00000425048 MISP3Q96FF7 219 aa9.68□□□□□ -0.86
LINC01040-201ENST00000425048 KRTAP4-8A0A0G2JLE6 195 aa9.67□□□□□ -0.86
LINC01040-201ENST00000425048 FAM87AP0C7U9 286 aa9.67□□□□□ -0.86
LINC01040-201ENST00000425048 KIF4BQ2VIQ3 1234 aa9.67□□□□□ -0.86
LINC01040-201ENST00000425048 C14orf37Q86TY3 774 aa9.67□□□□□ -0.86
LINC01040-201ENST00000425048 ALKBH8Q96BT7 664 aaKnown RBP9.67□□□□□ -0.86
LINC01040-201ENST00000425048 DISC1Q9NRI5 854 aa9.67□□□□□ -0.86
LINC01040-201ENST00000425048 CDK5R2Q13319 367 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 PLCL1Q15111 1095 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 SPRED2Q7Z698 418 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 POU5F2Q8N7G0 328 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 CCER1Q8TC90 406 aaPredicted RBP9.66□□□□□ -0.86
LINC01040-201ENST00000425048 NETO1Q8TDF5 533 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 RBCK1Q9BYM8 510 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 TMEM39AQ9NV64 488 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 NLRP2Q9NX02 1062 aa9.66□□□□□ -0.86
LINC01040-201ENST00000425048 BIN1O00499 593 aa9.65□□□□□ -0.86
LINC01040-201ENST00000425048 RNGTTO60942 597 aaKnown RBP9.65□□□□□ -0.86
LINC01040-201ENST00000425048 FCGRTP55899 365 aa9.65□□□□□ -0.86
LINC01040-201ENST00000425048 PDE4CQ08493 712 aa9.65□□□□□ -0.86
LINC01040-201ENST00000425048 BNIP3Q12983 259 aa9.65□□□□□ -0.86
LINC01040-201ENST00000425048 ZNF574Q6ZN55 896 aaPredicted RBP9.65□□□□□ -0.86
LINC01040-201ENST00000425048 GPN3Q9UHW5 284 aaPredicted RBP9.65□□□□□ -0.86
LINC01040-201ENST00000425048 PCOLCE2Q9UKZ9 415 aa9.65□□□□□ -0.86
LINC01040-201ENST00000425048 XRCC5P13010 732 aaKnown RBP9.64□□□□□ -0.87
LINC01040-201ENST00000425048 TTLL4Q14679 1199 aa9.64□□□□□ -0.87
LINC01040-201ENST00000425048 ZNF792Q3KQV3 632 aa9.64□□□□□ -0.87
LINC01040-201ENST00000425048 KCNB2Q92953 911 aa9.64□□□□□ -0.87
LINC01040-201ENST00000425048 PCDHGC5Q9Y5F6 944 aa9.64□□□□□ -0.87
LINC01040-201ENST00000425048 PLD6Q8N2A8 252 aaKnown RBP9.63□□□□□ -0.87
LINC01040-201ENST00000425048 VAV3Q9UKW4 847 aa9.63□□□□□ -0.87
LINC01040-201ENST00000425048 PDZD3Q86UT5 571 aa9.62□□□□□ -0.87
LINC01040-201ENST00000425048 FAM181AQ8N9Y4 354 aa9.62□□□□□ -0.87
LINC01040-201ENST00000425048 MKNK2Q9HBH9 465 aa9.62□□□□□ -0.87
LINC01040-201ENST00000425048 PAPLNO95428 1278 aa9.61□□□□□ -0.87
LINC01040-201ENST00000425048 HCLS1P14317 486 aaPredicted RBP9.61□□□□□ -0.87
LINC01040-201ENST00000425048 WFDC3Q8IUB2 231 aa9.61□□□□□ -0.87
LINC01040-201ENST00000425048 SSU72Q9NP77 194 aaKnown RBP9.61□□□□□ -0.87
LINC01040-201ENST00000425048 C8AP07357 584 aa9.6□□□□□ -0.87
LINC01040-201ENST00000425048 CD8BP10966 210 aa9.6□□□□□ -0.87
LINC01040-201ENST00000425048 ARNTP27540 789 aa9.6□□□□□ -0.87
LINC01040-201ENST00000425048 PRKCQQ04759 706 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms