RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TFCP2Q12800 502 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 STRCP1A6NGW2 1772 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 ATRNO75882 1429 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 SCP2P22307 547 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 UBXN4Q92575 508 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 ETAA1Q9NY74 926 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 PA2G4Q9UQ80 394 aaKnown RBP11.24□□□□□ -0.61
USP54-205ENST00000424265 EFCAB13Q8IY85 973 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 RNF41Q9H4P4 317 aaPredicted RBP11.24□□□□□ -0.61
USP54-205ENST00000424265 ATP6V1DQ9Y5K8 247 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 NBPF26B4DH59 902 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 NEFHP12036 1026 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 NBPF15Q8N660 670 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 MYO6Q9UM54 1294 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 COL16A1Q07092 1604 aaPredicted RBP11.24□□□□□ -0.61
USP54-205ENST00000424265 DISP2A7MBM2 1401 aa11.24□□□□□ -0.61
USP54-205ENST00000424265 ERLIN2O94905 339 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 GNAT2P19087 354 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 NEDD9Q14511 834 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 HMG20BQ9P0W2 317 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 EPB41L2O43491 1005 aaKnown RBP11.23□□□□□ -0.61
USP54-205ENST00000424265 OAS2P29728 719 aaKnown RBP11.23□□□□□ -0.61
USP54-205ENST00000424265 UBE4AQ14139 1066 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 SUGP1Q8IWZ8 645 aaKnown RBP11.23□□□□□ -0.61
USP54-205ENST00000424265 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP54-205ENST00000424265 LEMD3Q9Y2U8 911 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 ADCY9O60503 1353 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 SEMA3EO15041 775 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 TRIM6Q9C030 488 aaPredicted RBP11.23□□□□□ -0.61
USP54-205ENST00000424265 JDP2Q8WYK2 163 aa11.23□□□□□ -0.61
USP54-205ENST00000424265 ARHGEF1Q92888 912 aaKnown RBP11.23□□□□□ -0.61
USP54-205ENST00000424265 NSFL1CQ9UNZ2 370 aaKnown RBP11.23□□□□□ -0.61
USP54-205ENST00000424265 EIF3CLB5ME19 914 aaKnown RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 NPR1P16066 1061 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 CDR1P51861 262 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 CLNS1AP54105 237 aaKnown RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 KMT5BQ4FZB7 885 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 WDR66Q8TBY9 1149 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 EIF3CQ99613 913 aaKnown RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 PACS2Q86VP3 889 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 PDRG1Q9NUG6 133 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 CYP46A1Q9Y6A2 500 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 CPLX1O14810 134 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 CWC27Q6UX04 472 aaKnown RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 RINLQ6ZS11 566 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 PAG1Q9NWQ8 432 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 HIBADHP31937 336 aaKnown RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 ACTN2P35609 894 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 RBM5P52756 815 aaKnown RBP eCLIP11.22□□□□□ -0.61
USP54-205ENST00000424265 POLA2Q14181 598 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 C2CD5Q86YS7 1000 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 MRFAP1L1Q96HT8 127 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 MKRN1Q9UHC7 482 aaKnown RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 PNMA6EA0A0J9YXQ4 647 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 KLHL33A6NCF5 533 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 TRAF1Q13077 416 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 MAP9Q49MG5 647 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 DPP8Q6V1X1 898 aaPredicted RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 NFXL1Q6ZNB6 911 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 CCDC186Q7Z3E2 898 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 LINC00116Q8NCU8 138 aa11.22□□□□□ -0.61
USP54-205ENST00000424265 N4BP2L2Q92802 583 aaPredicted RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 CRNKL1Q9BZJ0 848 aaKnown RBP11.22□□□□□ -0.61
USP54-205ENST00000424265 COL22A1Q8NFW1 1626 aaPredicted RBP11.21□□□□□ -0.61
USP54-205ENST00000424265 ZNF34Q8IZ26 560 aa11.21□□□□□ -0.61
USP54-205ENST00000424265 UFL1O94874 794 aa11.21□□□□□ -0.61
USP54-205ENST00000424265 IGKV5-2P06315 115 aa11.21□□□□□ -0.61
USP54-205ENST00000424265 LMBRD1Q9NUN5 540 aa11.21□□□□□ -0.61
USP54-205ENST00000424265 KIAA0754O94854 1291 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 SWT1Q5T5J6 900 aaKnown RBP11.21□□□□□ -0.62
USP54-205ENST00000424265 FBXO38Q6PIJ6 1188 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 PLEKHM2Q8IWE5 1019 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 ZSCAN31Q96LW9 406 aaPredicted RBP11.21□□□□□ -0.62
USP54-205ENST00000424265 XDHP47989 1333 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 GOLGA6L4A6NEF3 574 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 MYO1BO43795 1136 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 CAMTA2O94983 1202 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 CCDC178Q5BJE1 867 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 CCDC171Q6TFL3 1326 aa11.21□□□□□ -0.62
USP54-205ENST00000424265 ONECUT3O60422 494 aaPredicted RBP11.2□□□□□ -0.62
USP54-205ENST00000424265 ATP5JP18859 108 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 HOMER1Q86YM7 354 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 SMARCE1Q969G3 411 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 NAPBQ9H115 298 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 USP5P45974 858 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 ITPK1Q13572 414 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 SUSD4Q5VX71 490 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 KIAA1524Q8TCG1 905 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 UTYO14607 1347 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 NAA25Q14CX7 972 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 ACRBPQ8NEB7 543 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 TRIM5Q9C035 493 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 LCMT1Q9UIC8 334 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 BCL9LQ86UU0 1499 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 GRAPQ13588 217 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 TRIM29Q14134 588 aa11.2□□□□□ -0.62
USP54-205ENST00000424265 SF3A1Q15459 793 aaKnown RBP11.2□□□□□ -0.62
USP54-205ENST00000424265 FOXD4L6Q3SYB3 417 aaPredicted RBP11.2□□□□□ -0.62
USP54-205ENST00000424265 FOXD4L3Q6VB84 417 aaPredicted RBP11.2□□□□□ -0.62
USP54-205ENST00000424265 GRAPLQ8TC17 118 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms