RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 SLMAPQ14BN4 828 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 MOV10L1Q9BXT6 1211 aaKnown RBP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 FBF1Q8TES7 1133 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 DNAAF2Q9NVR5 837 aaKnown RBP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 TCP11L2Q8N4U5 519 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 UTP14AQ9BVJ6 771 aaKnown RBP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 MRC2Q9UBG0 1479 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 TMOD4Q9NZQ9 345 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 COL17A1Q9UMD9 1497 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 UBASH3AP57075 661 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 WDR62O43379 1518 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 FMNL1O95466 1100 aaPredicted RBP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 GUCY2FP51841 1108 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 GNAI1P63096 354 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 C14orf80Q86SX3 495 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 FUT8Q9BYC5 575 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 LDHAP00338 332 aaKnown RBP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 PARP1P09874 1014 aaKnown RBP3.84□□□□□ -1.8
SYNE1-212ENST00000423061 HVCN1Q96D96 273 aa3.84□□□□□ -1.8
SYNE1-212ENST00000423061 ANP32DO95626 131 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 SLC7A5Q01650 507 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 SPATS2Q86XZ4 545 aaKnown RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 IPO5O00410 1097 aaKnown RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 RAB27AP51159 221 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 FAM47EQ6ZV65 393 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 ALS2CR12Q96Q35 445 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 MPHOSPH8Q99549 860 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 ZFATQ9P243 1243 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 MAEAQ7L5Y9 396 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 DTNBP1Q96EV8 351 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 CBFA2T2O43439 604 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PAF1Q8N7H5 531 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 GPR101Q96P66 508 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 BRD8Q9H0E9 1235 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 MYCLP1P12525 358 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 CPA1P15085 419 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 SLC8A3P57103 927 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 IQCEQ6IPM2 695 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 DYDC2Q96IM9 177 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 ARPC5LQ9BPX5 153 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC6Q16204 474 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 DRAXINQ8NBI3 349 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 ADAMTS12P58397 1594 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 NUP160Q12769 1436 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PIP4K2BP78356 416 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 CFAP58Q5T655 872 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 TSHZ1Q6ZSZ6 1077 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 MSL3Q8N5Y2 521 aaKnown RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 SMARCC2Q8TAQ2 1214 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PAIP2BQ9ULR5 123 aaKnown RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 DRC3Q9H069 523 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 VCAM1P19320 739 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PDE6CP51160 858 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 LMOD2Q6P5Q4 547 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 VCXQ9H320 206 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 M0R2C6 588 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 IFFO1Q0D2I5 559 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 NSD3Q9BZ95 1437 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 COG3Q96JB2 828 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 OSBPL9Q96SU4 736 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 GUCY1A3Q02108 690 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 HIBCHQ6NVY1 386 aaPredicted RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 CUL5Q93034 780 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 GORASP1Q9BQQ3 440 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 RNASE9P60153 205 aaKnown RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 ICA1Q05084 483 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 STXBP3O00186 592 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 IGHMBP2P38935 993 aaKnown RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 CUL4BQ13620 913 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 LNPEPQ9UIQ6 1025 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PLXNC1O60486 1568 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 HLTFQ14527 1009 aaKnown RBP eCLIP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 IFIT2P09913 472 aaKnown RBP3.83□□□□□ -1.8
SYNE1-212ENST00000423061 GJB2P29033 226 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC63Q8NA47 563 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 EHBP1Q8NDI1 1231 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PSD3Q9NYI0 1048 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PBRM1Q86U86 1689 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 ZNF653Q96CK0 615 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 ANKRD30BQ9BXX2 1392 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 A0A1B0GVG6 124 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 E2F6O75461 281 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 MPP3Q13368 585 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 SYNE3Q6ZMZ3 975 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PNKPQ96T60 521 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 PTPRGP23470 1445 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 GALNT17Q6IS24 598 aa3.83□□□□□ -1.8
SYNE1-212ENST00000423061 EVI5O60447 810 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CLEC17AQ6ZS10 378 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TBC1D1Q86TI0 1168 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 MYO1AQ9UBC5 1043 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CYP46A1Q9Y6A2 500 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TMEM110-MUSTN1A8MSY1 372 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 MAP7Q14244 749 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 IQCB1Q15051 598 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ANO5Q75V66 913 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 LMCD1Q9NZU5 365 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms