RNA–Protein interactions for RNA: ENST00000420047.1

SEMA3A-202, Transcript of semaphorin 3A, humanhuman

TSL 4

Gene SEMA3A, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3A-202ENST00000420047 GRIA4P48058 902 aa6.5□□□□□ -1.37
SEMA3A-202ENST00000420047 SF3B2Q13435 895 aaKnown RBP6.5□□□□□ -1.37
SEMA3A-202ENST00000420047 ZNF648Q5T619 568 aaPredicted RBP6.5□□□□□ -1.37
SEMA3A-202ENST00000420047 GALNT12Q8IXK2 581 aa6.5□□□□□ -1.37
SEMA3A-202ENST00000420047 TCF12Q99081 682 aa6.5□□□□□ -1.37
SEMA3A-202ENST00000420047 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.5□□□□□ -1.37
SEMA3A-202ENST00000420047 AOC2O75106 756 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 FUT4P22083 530 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 MTMR3Q13615 1198 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 SPRED3Q2MJR0 410 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 FBLN7Q53RD9 439 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 ZNF574Q6ZN55 896 aaPredicted RBP6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 TMEM40Q8WWA1 233 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 TRIM56Q9BRZ2 755 aaKnown RBP6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 SERPINA10Q9UK55 444 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 VAV3Q9UKW4 847 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 MTMR7Q9Y216 660 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 DAGLAQ9Y4D2 1042 aa6.49□□□□□ -1.37
SEMA3A-202ENST00000420047 BAZ1BQ9UIG0 1483 aaKnown RBP6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 DYNC1LI2O43237 492 aaPredicted RBP6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 POLR3DP05423 398 aaPredicted RBP6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 FKBP4Q02790 459 aaKnown RBP eCLIP6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 PKN1Q16512 942 aa6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 KIAA0319Q5VV43 1072 aa6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 GLIS3Q8NEA6 775 aa6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 NETO1Q8TDF5 533 aa6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 CCDC97Q96F63 343 aaPredicted RBP6.48□□□□□ -1.37
SEMA3A-202ENST00000420047 WIZO95785 1651 aa6.47□□□□□ -1.37
SEMA3A-202ENST00000420047 PRKCQQ04759 706 aa6.47□□□□□ -1.37
SEMA3A-202ENST00000420047 BNIP3Q12983 259 aa6.47□□□□□ -1.37
SEMA3A-202ENST00000420047 AP3B2Q13367 1082 aa6.47□□□□□ -1.37
SEMA3A-202ENST00000420047 WDR18Q9BV38 432 aa6.47□□□□□ -1.37
SEMA3A-202ENST00000420047 MKNK2Q9HBH9 465 aa6.47□□□□□ -1.37
SEMA3A-202ENST00000420047 SMARCA2P51531 1590 aa6.47□□□□□ -1.37
SEMA3A-202ENST00000420047 ECEL1O95672 775 aa6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 NEFLP07196 543 aa6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 PTPN12Q05209 780 aaKnown RBP6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 ZNF124Q15973 351 aa6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 FAM168AQ92567 244 aa6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 ZNF576Q9H609 170 aa6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 RC3H2Q9HBD1 1191 aaKnown RBP6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 BAZ1AQ9NRL2 1556 aaPredicted RBP6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 CCDC87Q9NVE4 849 aa6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 PPP1R9AQ9ULJ8 1098 aa6.46□□□□□ -1.38
SEMA3A-202ENST00000420047 RNASE1P07998 156 aaKnown RBP6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 CD8BP10966 210 aa6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 ITPKAP23677 461 aa6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 PDE3AQ14432 1141 aa6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 KRTAP19-4Q3LI73 84 aa6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 KSR1Q8IVT5 923 aa6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 PLD6Q8N2A8 252 aaKnown RBP6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 PI4K2BQ8TCG2 481 aa6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 LGR6Q9HBX8 967 aa6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 MBNL3Q9NUK0 354 aaKnown RBP6.45□□□□□ -1.38
SEMA3A-202ENST00000420047 SLFN14P0C7P3 912 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 FAM87AP0C7U9 286 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 HNRNPUQ00839 825 aaKnown RBP eCLIP6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 LCE4AQ5TA78 99 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 SPOCD1Q6ZMY3 1216 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 BHLHE22Q8NFJ8 381 aaPredicted RBP6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 SLC38A3Q99624 504 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 ATXN3LQ9H3M9 355 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 CRIM1Q9NZV1 1036 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 HMGXB3Q12766 1538 aa6.44□□□□□ -1.38
SEMA3A-202ENST00000420047 TMEM88BA6NKF7 163 aa6.43□□□□□ -1.38
SEMA3A-202ENST00000420047 TMPRSS2O15393 492 aa6.43□□□□□ -1.38
SEMA3A-202ENST00000420047 IFI16Q16666 785 aaKnown RBP6.43□□□□□ -1.38
SEMA3A-202ENST00000420047 RPS26P11Q5JNZ5 115 aaPredicted RBP6.43□□□□□ -1.38
SEMA3A-202ENST00000420047 KRTAP4-2Q9BYR5 136 aa6.43□□□□□ -1.38
SEMA3A-202ENST00000420047 PIDD1Q9HB75 910 aa6.43□□□□□ -1.38
SEMA3A-202ENST00000420047 ID3Q02535 119 aa6.42□□□□□ -1.38
SEMA3A-202ENST00000420047 CDK5R2Q13319 367 aa6.42□□□□□ -1.38
SEMA3A-202ENST00000420047 SMYD4Q8IYR2 804 aaPredicted RBP6.42□□□□□ -1.38
SEMA3A-202ENST00000420047 EHD4Q9H223 541 aa6.42□□□□□ -1.38
SEMA3A-202ENST00000420047 ADAMTS6Q9UKP5 1117 aa6.42□□□□□ -1.38
SEMA3A-202ENST00000420047 TMEM265A0A087WTH1 108 aa6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 FAM181AQ8N9Y4 354 aa6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 LRRN4CLQ8ND94 238 aa6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 FAM84AQ96KN4 292 aa6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 HRASLS5Q96KN8 279 aa6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 FANCD2OSQ96PS1 177 aa6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 FAM53CQ9NYF3 392 aa6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 RSF1Q96T23 1441 aaPredicted RBP6.41□□□□□ -1.38
SEMA3A-202ENST00000420047 PEG3Q9GZU2 1588 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 KIF21AQ7Z4S6 1674 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 LIG1P18858 919 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 AOC3Q16853 763 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 KIF4BQ2VIQ3 1234 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 SLC23A3Q6PIS1 610 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 FLAD1Q8NFF5 587 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 CCDC86Q9H6F5 360 aaKnown RBP6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 DISC1Q9NRI5 854 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 KRT82Q9NSB4 513 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 PCOLCE2Q9UKZ9 415 aa6.4□□□□□ -1.38
SEMA3A-202ENST00000420047 CUX2O14529 1486 aa6.4□□□□□ -1.39
SEMA3A-202ENST00000420047 CEACAM5P06731 702 aa6.39□□□□□ -1.39
SEMA3A-202ENST00000420047 OXCT1P55809 520 aa6.39□□□□□ -1.39
SEMA3A-202ENST00000420047 MESP2Q0VG99 397 aa6.39□□□□□ -1.39
SEMA3A-202ENST00000420047 ANGEL2Q5VTE6 544 aaKnown RBP6.39□□□□□ -1.39
SEMA3A-202ENST00000420047 PHLDB3Q6NSJ2 640 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms