RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 LAS1LQ9Y4W2 734 aaKnown RBP6.6□□□□□ -1.35
VPS13A-207ENST00000419472 PTGIRP43119 386 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 ZNF157P51786 506 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-207ENST00000419472 FOXD4Q12950 439 aaPredicted RBP6.59□□□□□ -1.35
VPS13A-207ENST00000419472 PERM1Q5SV97 790 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 BICDL1Q6ZP65 573 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 LHFPL2Q6ZUX7 228 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 GATAD2BQ8WXI9 593 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 RNF223E7ERA6 249 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 AKAP10O43572 662 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 CAND2O75155 1236 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 RAPGEF3O95398 923 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 BPNT1O95861 308 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 FOXB2Q5VYV0 432 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 HS3ST6Q96QI5 342 aa6.59□□□□□ -1.35
VPS13A-207ENST00000419472 ADCY3O60266 1144 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 ST18O60284 1047 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 ATP4AP20648 1035 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 L1CAMP32004 1257 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 MTMR1Q13613 665 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 SAFB2Q14151 953 aaKnown RBP eCLIP6.58□□□□□ -1.36
VPS13A-207ENST00000419472 REC114Q7Z4M0 266 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 FAM178BQ8IXR5 827 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 ITPKCQ96DU7 683 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 NECAB3Q96P71 396 aaPredicted RBP6.58□□□□□ -1.36
VPS13A-207ENST00000419472 HHIPQ96QV1 700 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 ZKSCAN3Q9BRR0 538 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 LRRC3Q9BY71 257 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 SFMBT1Q9UHJ3 866 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 NOB1Q9ULX3 412 aaKnown RBP6.58□□□□□ -1.36
VPS13A-207ENST00000419472 CEP170Q5SW79 1584 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 UPK3BL1B0FP48 263 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 ALG1L2C9J202 215 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 UPK3BL2E5RIL1 263 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 PLIN1O60240 522 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 GRIN3BO60391 1043 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 FAAP100Q0VG06 881 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 SPRED3Q2MJR0 410 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 CWF19L2Q2TBE0 894 aaKnown RBP6.58□□□□□ -1.36
VPS13A-207ENST00000419472 SLC4A10Q6U841 1118 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 AFAP1L2Q8N4X5 818 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 ATL2Q8NHH9 583 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 TTC8Q8TAM2 541 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 KCTD12Q96CX2 325 aaKnown RBP6.58□□□□□ -1.36
VPS13A-207ENST00000419472 TARS2Q9BW92 718 aaKnown RBP6.58□□□□□ -1.36
VPS13A-207ENST00000419472 MCM8Q9UJA3 840 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 RUSC2Q8N2Y8 1516 aa6.58□□□□□ -1.36
VPS13A-207ENST00000419472 CASP7P55210 303 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 TYRO3Q06418 890 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 NBPF1Q3BBV0 1214 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 LONRF3Q496Y0 759 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 KRT25Q7Z3Z0 450 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 CLUHP3Q96NS8 147 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 A0A1W2PQH9 124 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 EDN3P14138 238 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 BRD3Q15059 726 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 TMEM67Q5HYA8 995 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 KSR2Q6VAB6 950 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 PODNQ7Z5L7 613 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 ZSWIM2Q8NEG5 633 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 RELTQ969Z4 430 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 TRIM52Q96A61 297 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 SEC31BQ9NQW1 1179 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 POTEMA6NI47 508 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 GSG1L2A8MUP6 293 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 RASGRP1O95267 797 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 ZNF165P49910 485 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 OS9Q13438 667 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-207ENST00000419472 HIF1AQ16665 826 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 AKAP4Q5JQC9 854 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 TTC6Q86TZ1 520 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 NLRP13Q86W25 1043 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 SYNPOQ8N3V7 929 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 ST13P5Q8NFI4 369 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-207ENST00000419472 RTFDC1Q9BY42 306 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-207ENST00000419472 ENAMQ9NRM1 1142 aa6.57□□□□□ -1.36
VPS13A-207ENST00000419472 SASH3O75995 380 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 PMLP29590 882 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 SLC27A3Q5K4L6 730 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 TTC39BQ5VTQ0 682 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-207ENST00000419472 CCNJLQ8IV13 435 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 MTMR8Q96EF0 704 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 ZFAND3Q9H8U3 227 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 PCDHB10Q9UN67 800 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 ARAP1Q96P48 1450 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 MYL1P05976 194 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 TARSP26639 723 aaKnown RBP6.56□□□□□ -1.36
VPS13A-207ENST00000419472 NEK2P51955 445 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 MPP2Q14168 576 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 ZYXQ15942 572 aaKnown RBP6.56□□□□□ -1.36
VPS13A-207ENST00000419472 Q6ZVU0 165 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 ZNF512BQ96KM6 892 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-207ENST00000419472 MIR1-1HGQ9H1L0 117 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 INTUQ9ULD6 942 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 PCDHB14Q9Y5E9 798 aa6.56□□□□□ -1.36
VPS13A-207ENST00000419472 SOX5P35711 763 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 ARSJQ5FYB0 599 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-207ENST00000419472 GNASQ5JWF2 1037 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 COL13A1Q5TAT6 717 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-207ENST00000419472 CNNM4Q6P4Q7 775 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms