RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 RBM28Q9NW13 759 aaKnown RBP9.81□□□□□ -0.84
USP54-203ENST00000418501 F13A1P00488 732 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 PODXL2Q9NZ53 605 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 TMOD2Q9NZR1 351 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 WWC3Q9ULE0 1092 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 SCN7AQ01118 1682 aa9.81□□□□□ -0.84
USP54-203ENST00000418501 ADCK5Q3MIX3 580 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 CRY2Q49AN0 593 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 MKNK2Q9HBH9 465 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 ATP6V0A2Q9Y487 856 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 PPARAQ07869 468 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 SSRP1Q08945 709 aaKnown RBP9.8□□□□□ -0.84
USP54-203ENST00000418501 LRRC4BQ9NT99 713 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 IQSEC3Q9UPP2 1182 aaPredicted RBP9.8□□□□□ -0.84
USP54-203ENST00000418501 MYH3P11055 1940 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 POLRMTO00411 1230 aaKnown RBP9.8□□□□□ -0.84
USP54-203ENST00000418501 HLA-DOAP06340 250 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 SCARF1Q14162 830 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 TTC6Q86TZ1 520 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 CTCFLQ8NI51 663 aaPredicted RBP9.8□□□□□ -0.84
USP54-203ENST00000418501 C8orf76Q96K31 380 aa9.8□□□□□ -0.84
USP54-203ENST00000418501 COL5A3P25940 1745 aaPredicted RBP9.8□□□□□ -0.84
USP54-203ENST00000418501 PRPF40AO75400 957 aaKnown RBP9.79□□□□□ -0.84
USP54-203ENST00000418501 CD2BP2O95400 341 aaKnown RBP9.79□□□□□ -0.84
USP54-203ENST00000418501 SLC15A2Q16348 729 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 IARSP41252 1262 aaKnown RBP9.79□□□□□ -0.84
USP54-203ENST00000418501 LIFRP42702 1097 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 ME3Q16798 604 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 FOXD4L5Q5VV16 416 aaPredicted RBP9.79□□□□□ -0.84
USP54-203ENST00000418501 MIGA1Q8NAN2 632 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 STAG1Q8WVM7 1258 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 FOXD4L4Q8WXT5 416 aaPredicted RBP9.79□□□□□ -0.84
USP54-203ENST00000418501 HDAC9Q9UKV0 1011 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 SYT1P21579 422 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 DDIT3P35638 169 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.79□□□□□ -0.84
USP54-203ENST00000418501 DUOX1Q9NRD9 1551 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 TDRD7Q8NHU6 1098 aaKnown RBP9.79□□□□□ -0.84
USP54-203ENST00000418501 AKT1S1Q96B36 256 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 TPCN1Q9ULQ1 816 aa9.79□□□□□ -0.84
USP54-203ENST00000418501 BCORQ6W2J9 1755 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 RANBP6O60518 1105 aaKnown RBP9.78□□□□□ -0.84
USP54-203ENST00000418501 MRE11P49959 708 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 PI16Q6UXB8 463 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 BRAPQ7Z569 592 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 LRP5O75197 1615 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 EXOSC10Q01780 885 aaKnown RBP9.78□□□□□ -0.84
USP54-203ENST00000418501 PODNQ7Z5L7 613 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 CD209Q9NNX6 404 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 ORC3Q9UBD5 711 aaPredicted RBP9.78□□□□□ -0.84
USP54-203ENST00000418501 UBE2HP62256 183 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 APOBRQ0VD83 1088 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 RTN1Q16799 776 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 CCDC73Q6ZRK6 1079 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 PTF1AQ7RTS3 328 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 COL23A1Q86Y22 540 aaPredicted RBP9.78□□□□□ -0.84
USP54-203ENST00000418501 RTKN2Q8IZC4 609 aa9.78□□□□□ -0.84
USP54-203ENST00000418501 HOOK1Q9UJC3 728 aaKnown RBP9.78□□□□□ -0.84
USP54-203ENST00000418501 TSPY2A6NKD2 308 aa9.77□□□□□ -0.84
USP54-203ENST00000418501 IFIT1BQ5T764 474 aaKnown RBP9.77□□□□□ -0.84
USP54-203ENST00000418501 CCDC24Q8N4L8 307 aa9.77□□□□□ -0.84
USP54-203ENST00000418501 NECAB1Q8N987 351 aa9.77□□□□□ -0.84
USP54-203ENST00000418501 ANAPC4Q9UJX5 808 aa9.77□□□□□ -0.84
USP54-203ENST00000418501 LAMB2P55268 1798 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 PTPDC1A2A3K4 754 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 GPSM2P81274 684 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 MECOMQ03112 1051 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 MFSD14BQ5SR56 506 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 SPATA32Q96LK8 384 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 IL25Q9H293 177 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 MCM9Q9NXL9 1143 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 CEP131Q9UPN4 1083 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 KDM4AO75164 1064 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 SBK1Q52WX2 424 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 TEX11Q8IYF3 940 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 LZTS2Q9BRK4 669 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 KAT14Q9H8E8 782 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 NOL7Q9UMY1 257 aaKnown RBP9.77□□□□□ -0.85
USP54-203ENST00000418501 CPA1P15085 419 aa9.77□□□□□ -0.85
USP54-203ENST00000418501 MB21D2Q8IYB1 491 aaPredicted RBP9.77□□□□□ -0.85
USP54-203ENST00000418501 TCRBV5S4A2TA0A5A2 114 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 KLRG2A4D1S0 409 aaPredicted RBP9.76□□□□□ -0.85
USP54-203ENST00000418501 DDAH1O94760 285 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 LCORLQ8N3X6 602 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 NSUN4Q96CB9 384 aaKnown RBP9.76□□□□□ -0.85
USP54-203ENST00000418501 B4E1Z4 1266 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 BMP15O95972 392 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 IL1R1P14778 569 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 PDIA3P30101 505 aaKnown RBP9.76□□□□□ -0.85
USP54-203ENST00000418501 MMP14P50281 582 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 TOB2Q14106 344 aaPredicted RBP9.76□□□□□ -0.85
USP54-203ENST00000418501 TBC1D16Q8TBP0 767 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 BICD2Q8TD16 824 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 NUP133Q8WUM0 1156 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 GZF1Q9H116 711 aaPredicted RBP9.76□□□□□ -0.85
USP54-203ENST00000418501 VPS33BQ9H267 617 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 MYO3BQ8WXR4 1341 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 PPP4CP60510 307 aa9.76□□□□□ -0.85
USP54-203ENST00000418501 CCT2P78371 535 aaKnown RBP9.76□□□□□ -0.85
USP54-203ENST00000418501 TTLL5Q6EMB2 1281 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms