RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 GAS2L3Q86XJ1 694 aa7.59□□□□□ -1.2
TM9SF4-202ENST00000398022 NUTM2AQ8IVF1 878 aaPredicted RBP7.59□□□□□ -1.2
TM9SF4-202ENST00000398022 GABPB2Q8TAK5 448 aaPredicted RBP7.59□□□□□ -1.2
TM9SF4-202ENST00000398022 PDGFDQ9GZP0 370 aaPredicted RBP7.59□□□□□ -1.2
TM9SF4-202ENST00000398022 U3KPZ7 1027 aaPredicted RBP7.59□□□□□ -1.2
TM9SF4-202ENST00000398022 BTAF1O14981 1849 aa7.59□□□□□ -1.2
TM9SF4-202ENST00000398022 KIF20BQ96Q89 1820 aa7.59□□□□□ -1.2
TM9SF4-202ENST00000398022 NPHP3Q7Z494 1330 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 TAF1LQ8IZX4 1826 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 SEMA3EO15041 775 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 NPHP1O15259 732 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 S100BP04271 92 aaPredicted RBP7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 PIK3CAP42336 1068 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 EIF2B5Q13144 721 aaKnown RBP7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 ENOX2Q16206 610 aaKnown RBP7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC93Q567U6 631 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 ZCCHC8Q6NZY4 707 aaKnown RBP7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 ANKRD44Q8N8A2 993 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC89Q8N998 374 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 PPP1R9BQ96SB3 815 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 CD163L1Q9NR16 1453 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 FAM83GA6ND36 823 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 CD2BP2O95400 341 aaKnown RBP7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 FGAP02671 866 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 HOXD10P28358 340 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 IL13P35225 146 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 DDB1Q16531 1140 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 COBLL1Q53SF7 1204 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 HS1BP3Q53T59 392 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 CAVIN1Q6NZI2 390 aaKnown RBP7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 EDC4Q6P2E9 1401 aaKnown RBP7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 FRS2Q8WU20 508 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 CASS4Q9NQ75 786 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 TOMM22Q9NS69 142 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 EMILIN1Q9Y6C2 1016 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 MCM2P49736 904 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 ZNF445P59923 1031 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 ARMC3Q5W041 872 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 SIRT2Q8IXJ6 389 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 MIGA1Q8NAN2 632 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 USP26Q9BXU7 913 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 NACA2Q9H009 215 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 COL4A3BPQ9Y5P4 624 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 PCNTO95613 3336 aa7.58□□□□□ -1.2
TM9SF4-202ENST00000398022 ERC2O15083 957 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 AGAP9Q5VTM2 703 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 ARL10Q8N8L6 244 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 C8orf58Q8NAV2 365 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 GIPC2Q8TF65 315 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 FAM81BQ96LP2 452 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 TRPV5Q9NQA5 729 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 CHD4Q14839 1912 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 PTPRCP08575 1304 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 MBD3O95983 291 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 CCDC144BQ3MJ40 725 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 BICD1Q96G01 975 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 TSPYL2Q9H2G4 693 aaPredicted RBP7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 AATKQ6ZMQ8 1374 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 COL5A2P05997 1499 aaPredicted RBP7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 GSPT1P15170 499 aaKnown RBP7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 EFCAB13Q8IY85 973 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 MAP3K14Q99558 947 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 TRIM7Q9C029 511 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 EXOC1Q9NV70 894 aa7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 C6orf203Q9P0P8 240 aaPredicted RBP7.57□□□□□ -1.2
TM9SF4-202ENST00000398022 MYO1BO43795 1136 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 ENPP1P22413 925 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 SMARCA1P28370 1054 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 UBE4AQ14139 1066 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 SUGP1Q8IWZ8 645 aaKnown RBP7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 YIPF2Q9BWQ6 316 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 HDAC9Q9UKV0 1011 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 F8VZ95 297 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 CDK5RAP3Q96JB5 506 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 FEZ1Q99689 392 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 RPAP3Q9H6T3 665 aaPredicted RBP7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 BIN2Q9UBW5 565 aaPredicted RBP7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 USTQ9Y2C2 406 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 JRKLQ9Y4A0 524 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 SPATA31A5Q5VU36 1347 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 SPATA31A7Q8IWB4 1347 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 WASLO00401 505 aaPredicted RBP7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 COL6A1P12109 1028 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 HOXA10P31260 410 aaPredicted RBP7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 PPP2R5BQ15173 497 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 ZSCAN23Q3MJ62 389 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 FAAH2Q6GMR7 532 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 NME9Q86XW9 330 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 UIMC1Q96RL1 719 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 SH3GL3Q99963 347 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 CLIP2Q9UDT6 1046 aa7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 R3HCC1Q9Y3T6 440 aaKnown RBP7.56□□□□□ -1.2
TM9SF4-202ENST00000398022 CPDO75976 1380 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 A0A0G2JS52 829 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 PRPF40AO75400 957 aaKnown RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 BBOX1O75936 387 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 ADAMTS2O95450 1211 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 MYCLP1P12525 358 aaPredicted RBP7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 SDSP20132 328 aa7.55□□□□□ -1.2
TM9SF4-202ENST00000398022 GJA8P48165 433 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms